AlloSure SNP Error Analysis
J. Collins | 2017-04-11
from collections import defaultdict, OrderedDict
from datetime import datetime
from math import log, sqrt
from matplotlib.backends.backend_pdf import PdfPages
from matplotlib.font_manager import FontProperties
from matplotlib.gridspec import GridSpec
from matplotlib.ticker import FuncFormatter
from operator import itemgetter
from scipy.stats import binom, norm, poisson
from tqdm import tqdm
import ggplot
import matplotlib as mpl
import matplotlib.mlab as mlabS
import matplotlib.pyplot as plt
import numpy as np
import os
import pandas as pd
import plotly
import random
import re
import seaborn as sns
import sys
import timeit
sns.set_style('whitegrid')
sns.set(font_scale=1.4)
%matplotlib inline
# from notebook.services.config import ConfigManager
# ConfigManager().update('notebook', {'ExecuteTime': {
# 'display_absolute_timestamps': False,
# 'display_absolute_timings': False,
# 'relative_timing_update_period': .005,
# 'template': {
# 'executed': 'started ${start_time}, finished in ${end_time}-${duration}',
# }
# }})
import plotly.plotly as py
import cufflinks as cf
cf.set_config_file(offline=True, world_readable=True, theme='ggplot')
# * * * ADD CUSTOM FUNCTIONS TO CFDNA_TOOLS MODULE * * *
def print_exec_time(init_time):
'''Function defintion to track total time taken for
a given cell to complete its execution.
'''
elapsed = timeit.default_timer() - init_time
print("Execution time: {} ms ".format(round(elapsed * 1000, 5)))
def mpl_reset():
'''Undo Seaborn style'''
del sns
mpl.rcParams.update(mpl.rcParamsDefault)
def to_percent(y, position):
'''Print dd-cfDNA labels in percentage.'''
# Ignore the passed in position. This has the effect of scaling the default
# tick locations.
s = str(100 * y)
# The percent symbol needs escaping in latex
if mpl.rcParams['text.usetex'] is True:
return s + r'$\%$'
else:
return s + '%'
def strip_all_whitespace(df):
for col in df.columns:
if df[col].dtype == object:
tmp_s = df[col].str.strip()
df.loc[:, col] = tmp_s
return df
def convert_result_to_float(df, col_name, div=1):
def f(x): return float(x) / div
for col in df.columns:
if col.endswith(col_name):
tmp_s = df[col].str.replace('%', '')
df.loc[:, col] = tmp_s.apply(f)
return df
def return_numeric(df):
return df_all.select_dtypes(
include=['float64']).dropna(
how='all',
axis=1)
def t_init():
return timeit.default_timer()
def distribute(series, n=100, set_xlim=True, p=97):
sns.set_style('white')
s = series.dropna()
fig, ax1 = plt.subplots(nrows=1,
ncols=1,
figsize=(8, 8))
y, x, _ = ax1.hist(
s,
bins=n,
normed=True,
fc='w',
ec='k',
lw=1.0,
zorder=3,
alpha=0.7,
label='{}'.format(
s.describe(
percentiles=[0.05, 0.1, 0.25,
0.5, 0.75, 0.9,
0.95])))
ax2 = ax1.twinx()
mean = s.clip_upper(0.01).median()
s_linx = np.linspace(min(s),
np.percentile(s, 95),
100)
ax1.plot(s_linx,
norm.pdf(s_linx,
loc=mean,
scale=s.clip_upper(0.01).std()),
'--k', lw=2.0, zorder=5)
ax2.plot(s_linx,
poisson.pmf(np.arange(100),
mu=mean * (1e2 / max(s_linx))),
'--', c='maroon', lw=2.0, zorder=6,
label="poisson")
for ax in (ax1, ax2):
ax.xaxis.set_ticks_position('bottom')
ax.set_xlim(min(s), max(s_linx))
ax.spines['top'].set_visible(False)
ax.xaxis.set_ticks_position('bottom')
ax.tick_params('both',
width=1,
which='major',)
ax.tick_params('y',
length=15,
colors='maroon',
pad=40,)
ax1.legend(loc='best',
bbox_to_anchor=(1, 1))
sns.despine(ax=ax1,
offset=10,
trim=True)
sns.despine(ax=ax2,
offset=10,
trim=True)
fig.tight_layout()
['size', 'width', 'color', 'tickdir', 'pad', 'labelsize', 'labelcolor', 'zorder', 'gridOn', 'tick1On', 'tick2On', 'label1On', 'label2On', 'length', 'direction', 'left', 'bottom', 'right', 'top', 'labelleft', 'labelbottom', 'labelright', 'labeltop']
pd.set_option('display.max_columns', 200)
pd.set_option('display.max_colwidth', 500)
pd.set_option('display.max_rows', 240)
pd.set_option('display.width', 100)
# autopep8 -dv -a -a
# pip install jupyter_contrib_nbextensions
# jupyter nbextensions_configurator enable
AV_all_smpls_list = pd.read_clipboard().Sample.values
AV_all_smpls_list
array(['153B1A-Oct-26-15', '153B1B-Oct-26-15', '153B1C-Oct-27-15', ...,
'WC44-14-07a-2-41092', 'TE93-34-45b-2-42353', 'NO56-89-30b-2-42354'], dtype=object)
# File input pathnames:
# seq01_smpl = '/Users/jcollins-macbook/Python/cfDNA/stanford/gallo-klvtx/CFDNA_SAMPLE_RESULT_REFLAB_MVW_01102017a.txt'
# seq01_SNP = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/CFDNA_SNP_RESULT_T1.txt'
# seq01_smpl = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/CFDNA_SAMPLE_RESULT_REFLAB_MVW_170201.csv'
# seq01_SNP = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/CFDNA_SNP_RESULT_T1_170201.csv'
seq01_smpl = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/caredx/Datasets/tertiary/170215_all_outputBySample.csv'
KT_smpl = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/caredx/AlloSure--Analytical_Validation/PCR-Multiplexing-project/KT170203_SDU_output_updated 170308.txt'
seq01_SNP = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/caredx/Datasets/tertiary/170215_all_outputBySNP.csv'
# seq01_SNP = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/caman trredx/Datasets/tertiary/CFDNA_SNP_RESULT_T1-2017_output.txt'
DART_lock2_smpls = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/caredx/Datasets/dart/DART_28Oct2017lock_eids.csv'
DART_lock2_PIDs = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/caredx/Datasets/dart/DART_28Oct2017lock_eids_sid.csv'
SNP_MiSeq_cov = '/Users/jcollins-macbook/Documents/iCloud-cfDNA/caredx/AlloSure--Analytical_Validation/PCR-Multiplexing-project/coverage-uniformity/282_amplicons_2X-vs-1X-coverage.csv'
SNP_cov = pd.read_csv(SNP_MiSeq_cov)
SNP_cov.set_index('SNP_ID', inplace=True)
SNP_cov
| Genome_location | Ref_start_pos | Ref_end_pos | rsID | SNP_pos_in_ref | Ref | Alt | amp_length | SNP_pos | SNP_cov_end_bound | SNP_cov_type | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP_ID | |||||||||||
| IISNP1 | chr11_115206646_115207761 | 501 | 616 | rs10488710 | chr11_115206646_115207761:531 | C | G | 116 | 31 | 35 | False |
| IISNP10 | chr4_46329095_46330254 | 501 | 660 | rs279844 | chr4_46329095_46330254:561 | A | T | 160 | 61 | 79 | False |
| IISNP100 | chr19_10599851_10600965 | 501 | 615 | rs1048290 | chr19_10599851_10600965:592 | G | C | 115 | 92 | 34 | False |
| IISNP101 | chr17_33998221_33999330 | 501 | 610 | rs1049379 | chr17_33998221_33999330:582 | G | C | 110 | 82 | 29 | True |
| IISNP102 | chr1_154744236_154745348 | 501 | 613 | rs1051614 | chr1_154744236_154745348:572 | C | G | 113 | 72 | 32 | True |
| IISNP103 | chr2_118574685_118575803 | 501 | 619 | rs1052637 | chr2_118574685_118575803:531 | C | G | 119 | 31 | 38 | False |
| IISNP104 | chr1_236381266_236382387 | 501 | 622 | rs1055851 | chr1_236381266_236382387:560 | G | C | 122 | 60 | 41 | True |
| IISNP105 | chr20_24939035_24940159 | 501 | 625 | rs1056033 | chr20_24939035_24940159:556 | G | C | 125 | 56 | 44 | True |
| IISNP106 | chr5_145441622_145442735 | 501 | 614 | rs1056149 | chr5_145441622_145442735:582 | G | C | 114 | 82 | 33 | True |
| IISNP107 | chr11_17519170_17520279 | 501 | 610 | rs1064074 | chr11_17519170_17520279:573 | C | G | 110 | 73 | 29 | True |
| IISNP108 | chr2_85769181_85770292 | 501 | 612 | rs1078004 | chr2_85769181_85770292:531 | C | G | 112 | 31 | 31 | False |
| IISNP109 | chr11_11292148_11293259 | 501 | 612 | rs10831567 | chr11_11292148_11293259:553 | G | C | 112 | 53 | 31 | True |
| IISNP11 | chr4_169663057_169664186 | 501 | 630 | rs6811238 | chr4_169663057_169664186:559 | T | G | 130 | 59 | 49 | True |
| IISNP110 | chr10_129899187_129900315 | 501 | 629 | rs11106 | chr10_129899187_129900315:592 | G | C | 129 | 92 | 48 | False |
| IISNP111 | chr1_75096893_75098000 | 501 | 608 | rs11210490 | chr1_75096893_75098000:534 | G | C | 108 | 34 | 27 | True |
| IISNP112 | chr7_130020932_130022055 | 501 | 624 | rs1126899 | chr7_130020932_130022055:557 | G | C | 124 | 57 | 43 | True |
| IISNP113 | chr15_78632267_78633388 | 501 | 622 | rs1127472 | chr15_78632267_78633388:564 | C | G | 122 | 64 | 41 | True |
| IISNP114 | chr10_24872787_24873906 | 501 | 620 | rs1127893 | chr10_24872787_24873906:583 | C | G | 120 | 83 | 39 | False |
| IISNP115 | chr5_176862952_176864062 | 501 | 611 | rs1130857 | chr5_176862952_176864062:568 | G | C | 111 | 68 | 30 | True |
| IISNP116 | chr4_88415067_88416171 | 501 | 605 | rs1049544 | chr4_88415067_88416171:570 | G | C | 105 | 70 | 24 | True |
| IISNP117 | chr19_44302506_44303626 | 501 | 621 | rs11547806 | chr19_44302506_44303626:561 | C | G | 121 | 61 | 40 | True |
| IISNP118 | chr12_121416065_121417194 | 501 | 630 | rs1169289 | chr12_121416065_121417194:558 | C | G | 130 | 58 | 49 | True |
| IISNP119 | chr9_2717972_2719101 | 501 | 630 | rs12237048 | chr9_2717972_2719101:563 | C | G | 130 | 63 | 49 | True |
| IISNP12 | chr16_78016473_78017602 | 501 | 630 | rs430046 | chr16_78016473_78017602:579 | C | T | 130 | 79 | 49 | True |
| IISNP120 | chr4_129042633_129043755 | 501 | 623 | rs12508837 | chr4_129042633_129043755:572 | C | G | 123 | 72 | 42 | True |
| IISNP121 | chr10_5136059_5137186 | 501 | 628 | rs12529 | chr10_5136059_5137186:593 | C | G | 128 | 93 | 47 | False |
| IISNP122 | chr6_170861722_170862832 | 501 | 611 | rs12717 | chr6_170861722_170862832:579 | G | C | 111 | 79 | 30 | True |
| IISNP123 | chr5_161118544_161119671 | 501 | 628 | rs13184586 | chr5_161118544_161119671:582 | C | G | 128 | 82 | 47 | True |
| IISNP124 | chr9_129455060_129456167 | 501 | 608 | rs13295990 | chr9_129455060_129456167:528 | G | C | 108 | 28 | 27 | True |
| IISNP125 | chr13_25008849_25009978 | 501 | 630 | rs13428 | chr13_25008849_25009978:593 | C | G | 130 | 93 | 49 | False |
| IISNP126 | chr19_48620482_48621601 | 501 | 620 | rs13436 | chr19_48620482_48621601:555 | C | G | 120 | 55 | 39 | True |
| IISNP127 | chr11_57798787_57799916 | 501 | 630 | rs1374570 | chr11_57798787_57799916:585 | G | C | 130 | 85 | 49 | False |
| IISNP128 | chr3_16305112_16306238 | 501 | 627 | rs14080 | chr3_16305112_16306238:563 | C | G | 127 | 63 | 46 | True |
| IISNP129 | chr9_125315189_125316306 | 501 | 618 | rs1411271 | chr9_125315189_125316306:590 | G | C | 118 | 90 | 37 | False |
| IISNP13 | chr19_39559236_39560337 | 501 | 602 | rs576261 | chr19_39559236_39560337:572 | A | C | 102 | 72 | 21 | True |
| IISNP130 | chr19_618466_619585 | 501 | 620 | rs14155 | chr19_618466_619585:556 | G | C | 120 | 56 | 39 | True |
| IISNP131 | chr1_247751483_247752601 | 501 | 619 | rs1151687 | chr1_247751483_247752601:537 | G | C | 119 | 37 | 38 | False |
| IISNP132 | chr12_49255241_49256366 | 501 | 626 | rs1565933 | chr12_49255241_49256366:558 | G | C | 126 | 58 | 45 | True |
| IISNP133 | chr12_14656198_14657327 | 501 | 630 | rs1600 | chr12_14656198_14657327:571 | G | C | 130 | 71 | 49 | True |
| IISNP134 | chr6_38781300_38782411 | 501 | 612 | rs1678690 | chr6_38781300_38782411:567 | C | G | 112 | 67 | 31 | True |
| IISNP135 | chr2_29415814_29416943 | 501 | 630 | rs1881421 | chr2_29415814_29416943:553 | G | C | 130 | 53 | 49 | True |
| IISNP136 | chr19_44981323_44982437 | 501 | 615 | rs1897820 | chr19_44981323_44982437:561 | C | G | 115 | 61 | 34 | True |
| IISNP137 | chr15_40655304_40656417 | 501 | 614 | rs1898882 | chr15_40655304_40656417:570 | G | C | 114 | 70 | 33 | True |
| IISNP138 | chr21_40669882_40670990 | 501 | 609 | rs2056844 | chr21_40669882_40670990:579 | G | C | 109 | 79 | 28 | True |
| IISNP139 | chr8_23058791_23059898 | 501 | 608 | rs20575 | chr8_23058791_23059898:534 | C | G | 108 | 34 | 27 | True |
| IISNP14 | chr8_28410486_28411610 | 501 | 625 | rs10092491 | chr8_28410486_28411610:587 | T | C | 125 | 87 | 44 | False |
| IISNP140 | chr21_47849924_47851051 | 501 | 628 | rs2070426 | chr21_47849924_47851051:561 | G | C | 128 | 61 | 47 | True |
| IISNP141 | chr6_33272320_33273427 | 501 | 608 | rs2071888 | chr6_33272320_33273427:536 | G | C | 108 | 36 | 27 | True |
| IISNP142 | chr12_31249317_31250444 | 501 | 628 | rs2075322 | chr12_31249317_31250444:545 | C | G | 128 | 45 | 47 | False |
| IISNP143 | chr6_52617161_52618275 | 501 | 615 | rs2180314 | chr6_52617161_52618275:571 | C | G | 115 | 71 | 34 | True |
| IISNP144 | chr6_41773010_41774136 | 501 | 627 | rs2185798 | chr6_41773010_41774136:567 | G | C | 127 | 67 | 46 | True |
| IISNP145 | chr12_5020815_5021938 | 501 | 624 | rs2227910 | chr12_5020815_5021938:534 | G | C | 124 | 34 | 43 | False |
| IISNP146 | chr9_137711436_137712561 | 501 | 626 | rs2228560 | chr9_137711436_137712561:562 | G | C | 126 | 62 | 45 | True |
| IISNP147 | chr2_215644872_215645995 | 501 | 624 | rs2229571 | chr2_215644872_215645995:593 | C | G | 124 | 93 | 43 | False |
| IISNP148 | chr2_75113219_75114341 | 501 | 623 | rs2229627 | chr2_75113219_75114341:571 | C | G | 123 | 71 | 42 | True |
| IISNP149 | chr3_129285829_129286957 | 501 | 629 | rs2245285 | chr3_129285829_129286957:585 | G | C | 129 | 85 | 48 | False |
| IISNP15 | chr16_5868144_5869263 | 501 | 620 | rs2342747 | chr16_5868144_5869263:557 | A | G | 120 | 57 | 39 | True |
| IISNP150 | chr21_44293171_44294278 | 501 | 608 | rs2248490 | chr21_44293171_44294278:574 | C | G | 108 | 74 | 27 | True |
| IISNP151 | chr7_150877678_150878790 | 501 | 613 | rs2253592 | chr7_150877678_150878790:583 | C | G | 113 | 83 | 32 | False |
| IISNP152 | chr1_22216012_22217133 | 501 | 622 | rs2254357 | chr1_22216012_22217133:593 | C | G | 122 | 93 | 41 | False |
| IISNP153 | chr14_58563143_58564270 | 501 | 628 | rs2273442 | chr14_58563143_58564270:552 | G | C | 128 | 52 | 47 | True |
| IISNP154 | chr10_99438974_99440086 | 501 | 613 | rs2275047 | chr10_99438974_99440086:568 | G | C | 113 | 68 | 32 | True |
| IISNP155 | chr12_130940594_130941723 | 501 | 630 | rs2277361 | chr12_130940594_130941723:557 | G | C | 130 | 57 | 49 | True |
| IISNP156 | chr12_56827164_56828284 | 501 | 621 | rs2279665 | chr12_56827164_56828284:531 | C | G | 121 | 31 | 40 | False |
| IISNP157 | chr9_8388794_8389902 | 501 | 609 | rs2279776 | chr9_8388794_8389902:571 | C | G | 109 | 71 | 28 | True |
| IISNP158 | chr22_37963741_37964868 | 501 | 628 | rs2281098 | chr22_37963741_37964868:559 | C | G | 128 | 59 | 47 | True |
| IISNP159 | chr19_10083723_10084832 | 501 | 610 | rs2287813 | chr19_10083723_10084832:570 | C | G | 110 | 70 | 29 | True |
| IISNP16 | chr3_32417091_32418199 | 501 | 609 | rs4364205 | chr3_32417091_32418199:554 | T | G | 109 | 54 | 28 | True |
| IISNP160 | chr17_76448943_76450062 | 501 | 620 | rs2289751 | chr17_76448943_76450062:563 | G | C | 120 | 63 | 39 | True |
| IISNP161 | chr15_22960301_22961425 | 501 | 625 | rs2289818 | chr15_22960301_22961425:568 | G | C | 125 | 68 | 44 | True |
| IISNP162 | chr1_87100813_87101939 | 501 | 627 | rs2292830 | chr1_87100813_87101939:563 | C | G | 127 | 63 | 46 | True |
| IISNP163 | chr8_27667377_27668505 | 501 | 629 | rs2294092 | chr8_27667377_27668505:593 | C | G | 129 | 93 | 48 | False |
| IISNP164 | chr6_126277677_126278784 | 501 | 608 | rs2295005 | chr6_126277677_126278784:554 | G | C | 108 | 54 | 27 | True |
| IISNP165 | chr10_90342263_90343376 | 501 | 614 | rs2296545 | chr10_90342263_90343376:575 | C | G | 114 | 75 | 33 | True |
| IISNP166 | chr7_138739465_138740586 | 501 | 622 | rs2297236 | chr7_138739465_138740586:573 | G | C | 122 | 73 | 41 | True |
| IISNP167 | chr7_156761669_156762794 | 501 | 626 | rs2302443 | chr7_156761669_156762794:556 | G | C | 126 | 56 | 45 | True |
| IISNP168 | chr16_88767192_88768321 | 501 | 630 | rs2306049 | chr16_88767192_88768321:578 | G | C | 130 | 78 | 49 | True |
| IISNP169 | chr22_45821381_45822501 | 501 | 621 | rs1022478 | chr22_45821381_45822501:576 | C | G | 121 | 76 | 40 | True |
| IISNP17 | chr20_15124404_15125523 | 501 | 620 | rs445251 | chr20_15124404_15125523:530 | G | C | 120 | 30 | 39 | False |
| IISNP170 | chr17_15216858_15217965 | 501 | 608 | rs230898 | chr17_15216858_15217965:580 | C | G | 108 | 80 | 27 | True |
| IISNP171 | chr19_36277889_36279010 | 501 | 622 | rs231235 | chr19_36277889_36279010:582 | C | G | 122 | 82 | 41 | True |
| IISNP172 | chr6_150209159_150210278 | 501 | 620 | rs2342767 | chr6_150209159_150210278:559 | C | G | 120 | 59 | 39 | True |
| IISNP173 | chr20_5903313_5904421 | 501 | 609 | rs236152 | chr20_5903313_5904421:536 | C | G | 109 | 36 | 28 | True |
| IISNP174 | chr3_48460757_48461883 | 501 | 627 | rs2362450 | chr3_48460757_48461883:557 | C | G | 127 | 57 | 46 | True |
| IISNP175 | chr2_27324182_27325292 | 501 | 611 | rs2384571 | chr2_27324182_27325292:543 | G | C | 111 | 43 | 30 | True |
| IISNP176 | chr5_75932415_75933522 | 501 | 608 | rs2455230 | chr5_75932415_75933522:551 | G | C | 108 | 51 | 27 | True |
| IISNP177 | chr5_140531170_140532269 | 501 | 600 | rs246703 | chr5_140531170_140532269:577 | C | G | 100 | 77 | 19 | True |
| IISNP178 | chr10_25700758_25701869 | 501 | 612 | rs2480345 | chr10_25700758_25701869:584 | C | G | 112 | 84 | 31 | False |
| IISNP179 | chr5_78339702_78340831 | 501 | 630 | rs248385 | chr5_78339702_78340831:556 | C | G | 130 | 56 | 49 | True |
| IISNP18 | chr9_27985366_27986466 | 501 | 601 | rs7041158 | chr9_27985366_27986466:573 | C | T | 101 | 73 | 20 | True |
| IISNP180 | chr1_62516111_62517226 | 501 | 616 | rs2498982 | chr1_62516111_62517226:573 | G | C | 116 | 73 | 35 | True |
| IISNP181 | chr10_38344113_38345242 | 501 | 630 | rs2505232 | chr10_38344113_38345242:588 | C | G | 130 | 88 | 49 | False |
| IISNP182 | chr11_94230690_94231811 | 501 | 622 | rs2509943 | chr11_94230690_94231811:568 | C | G | 122 | 68 | 41 | True |
| IISNP183 | chr16_4309882_4311001 | 501 | 620 | rs251732 | chr16_4309882_4311001:587 | C | G | 120 | 87 | 39 | False |
| IISNP184 | chr9_136536239_136537346 | 501 | 608 | rs2519123 | chr9_136536239_136537346:555 | C | G | 108 | 55 | 27 | True |
| IISNP185 | chr7_25194102_25195226 | 501 | 625 | rs2523072 | chr7_25194102_25195226:564 | G | C | 125 | 64 | 44 | True |
| IISNP186 | chr18_44560549_44561667 | 501 | 619 | rs2571028 | chr18_44560549_44561667:552 | C | G | 119 | 52 | 38 | True |
| IISNP187 | chr11_4566780_4567909 | 501 | 630 | rs2657167 | chr11_4566780_4567909:556 | C | G | 130 | 56 | 49 | True |
| IISNP188 | chr8_143694218_143695347 | 501 | 630 | rs28686812 | chr8_143694218_143695347:558 | G | C | 130 | 58 | 49 | True |
| IISNP189 | chr10_126714134_126715248 | 501 | 615 | rs2946994 | chr10_126714134_126715248:581 | G | C | 115 | 81 | 34 | True |
| IISNP19 | chr1_233447873_233448982 | 501 | 610 | rs1294331 | chr1_233447873_233448982:541 | C | T | 110 | 41 | 29 | True |
| IISNP190 | chr19_53343564_53344688 | 501 | 625 | rs10419826 | chr19_53343564_53344688:555 | C | G | 125 | 55 | 44 | True |
| IISNP191 | chr11_125763182_125764289 | 501 | 608 | rs3088241 | chr11_125763182_125764289:565 | C | G | 108 | 65 | 27 | True |
| IISNP192 | chr17_35901690_35902813 | 501 | 624 | rs3110623 | chr17_35901690_35902813:536 | C | G | 124 | 36 | 43 | False |
| IISNP193 | chr7_12268849_12269978 | 501 | 630 | rs3173615 | chr7_12268849_12269978:569 | C | G | 130 | 69 | 49 | True |
| IISNP194 | chr16_11773071_11774198 | 501 | 628 | rs3190321 | chr16_11773071_11774198:592 | C | G | 128 | 92 | 47 | False |
| IISNP195 | chr22_31490725_31491854 | 501 | 630 | rs3205187 | chr22_31490725_31491854:571 | G | C | 130 | 71 | 49 | True |
| IISNP196 | chr4_77660183_77661297 | 501 | 615 | rs344141 | chr4_77660183_77661297:549 | C | G | 115 | 49 | 34 | True |
| IISNP197 | chr4_186379303_186380429 | 501 | 627 | rs35596415 | chr4_186379303_186380429:597 | G | C | 127 | 97 | 46 | False |
| IISNP198 | chr22_22868645_22869769 | 501 | 625 | rs362124 | chr22_22868645_22869769:565 | C | G | 125 | 65 | 44 | True |
| IISNP199 | chr19_54663644_54664769 | 501 | 626 | rs36657 | chr19_54663644_54664769:566 | G | C | 126 | 66 | 45 | True |
| IISNP2 | chr3_113804421_113805528 | 501 | 608 | rs1872575 | chr3_113804421_113805528:559 | G | A | 108 | 59 | 27 | True |
| IISNP20 | chr5_17374335_17375441 | 501 | 607 | rs159606 | chr5_17374335_17375441:564 | A | G | 107 | 64 | 26 | True |
| IISNP200 | chr2_219601952_219603075 | 501 | 624 | rs3731877 | chr2_219601952_219603075:548 | G | C | 124 | 48 | 43 | True |
| IISNP201 | chr2_220378975_220380095 | 501 | 621 | rs3731909 | chr2_220378975_220380095:586 | C | G | 121 | 86 | 40 | False |
| IISNP202 | chr6_76659989_76661118 | 501 | 630 | rs3734311 | chr6_76659989_76661118:563 | G | C | 130 | 63 | 49 | True |
| IISNP203 | chr7_20180151_20181280 | 501 | 630 | rs3735615 | chr7_20180151_20181280:567 | C | G | 130 | 67 | 49 | True |
| IISNP204 | chr10_128018457_128019577 | 501 | 621 | rs3740199 | chr10_128018457_128019577:569 | C | G | 121 | 69 | 40 | True |
| IISNP205 | chr2_101009515_101010629 | 501 | 615 | rs3748930 | chr2_101009515_101010629:568 | G | C | 115 | 68 | 34 | True |
| IISNP206 | chr11_8946706_8947820 | 501 | 615 | rs3751066 | chr11_8946706_8947820:578 | G | C | 115 | 78 | 34 | True |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| IISNP245 | chr11_117163245_117164370 | 501 | 626 | rs638405 | chr11_117163245_117164370:580 | C | G | 126 | 80 | 45 | True |
| IISNP246 | chr6_56482232_56483352 | 501 | 621 | rs6459166 | chr6_56482232_56483352:570 | C | G | 121 | 70 | 40 | True |
| IISNP247 | chr6_138412785_138413907 | 501 | 623 | rs648802 | chr6_138412785_138413907:549 | G | C | 123 | 49 | 42 | True |
| IISNP248 | chr19_57837471_57838600 | 501 | 630 | rs6510057 | chr19_57837471_57838600:548 | C | G | 130 | 48 | 49 | False |
| IISNP249 | chr3_186917177_186918300 | 501 | 624 | rs6764714 | chr3_186917177_186918300:575 | C | G | 124 | 75 | 43 | True |
| IISNP25 | chr11_5098168_5099267 | 501 | 600 | rs10768550 | chr11_5098168_5099267:547 | C | T | 100 | 47 | 19 | True |
| IISNP250 | chr3_14755064_14756187 | 501 | 624 | rs6790129 | chr3_14755064_14756187:554 | C | G | 124 | 54 | 43 | True |
| IISNP251 | chr3_45052203_45053327 | 501 | 625 | rs6794 | chr3_45052203_45053327:573 | G | C | 125 | 73 | 44 | True |
| IISNP252 | chr3_183777454_183778574 | 501 | 621 | rs6807362 | chr3_183777454_183778574:557 | G | C | 121 | 57 | 40 | True |
| IISNP253 | chr4_139139958_139141085 | 501 | 628 | rs6838248 | chr4_139139958_139141085:537 | G | C | 128 | 37 | 47 | False |
| IISNP254 | chr7_141672808_141673933 | 501 | 626 | rs713598 | chr7_141672808_141673933:538 | C | G | 126 | 38 | 45 | False |
| IISNP255 | chr14_50798535_50799661 | 501 | 627 | rs7161563 | chr14_50798535_50799661:592 | G | C | 127 | 92 | 46 | False |
| IISNP256 | chr10_114052989_114054096 | 501 | 608 | rs726009 | chr10_114052989_114054096:558 | C | G | 108 | 58 | 27 | True |
| IISNP257 | chr1_214836531_214837646 | 501 | 616 | rs7289 | chr1_214836531_214837646:580 | C | G | 116 | 80 | 35 | True |
| IISNP258 | chr12_14018199_14019328 | 501 | 630 | rs7301328 | chr12_14018199_14019328:579 | G | C | 130 | 79 | 49 | True |
| IISNP259 | chr13_73348771_73349897 | 501 | 627 | rs7332388 | chr13_73348771_73349897:589 | G | C | 127 | 89 | 46 | False |
| IISNP26 | chr12_130761129_130762238 | 501 | 610 | rs10773760 | chr12_130761129_130762238:568 | A | G | 110 | 68 | 29 | True |
| IISNP260 | chr22_51063487_51064595 | 501 | 609 | rs743616 | chr22_51063487_51064595:553 | G | C | 109 | 53 | 28 | True |
| IISNP261 | chr6_36286765_36287879 | 501 | 615 | rs743852 | chr6_36286765_36287879:548 | G | C | 115 | 48 | 34 | True |
| IISNP262 | chr17_71232306_71233435 | 501 | 630 | rs745142 | chr17_71232306_71233435:576 | G | C | 130 | 76 | 49 | True |
| IISNP263 | chr6_46107197_46108304 | 501 | 608 | rs7451713 | chr6_46107197_46108304:556 | C | G | 108 | 56 | 27 | True |
| IISNP264 | chr1_205553518_205554618 | 501 | 601 | rs7526132 | chr1_205553518_205554618:568 | G | C | 101 | 68 | 20 | True |
| IISNP265 | chr1_47799106_47800221 | 501 | 616 | rs7543016 | chr1_47799106_47800221:534 | G | C | 116 | 34 | 35 | False |
| IISNP266 | chr2_28824241_28825363 | 501 | 623 | rs7601771 | chr2_28824241_28825363:553 | C | G | 123 | 53 | 42 | True |
| IISNP267 | chr7_4026399_4027521 | 501 | 623 | rs7785899 | chr7_4026399_4027521:546 | C | G | 123 | 46 | 42 | True |
| IISNP268 | chr1_111956532_111957661 | 501 | 630 | rs7825 | chr1_111956532_111957661:566 | C | G | 130 | 66 | 49 | True |
| IISNP269 | chr14_103439920_103441032 | 501 | 613 | rs8009219 | chr14_103439920_103441032:554 | G | C | 113 | 54 | 32 | True |
| IISNP27 | chr9_137416746_137417845 | 501 | 600 | rs10776839 | chr9_137416746_137417845:563 | G | T | 100 | 63 | 19 | True |
| IISNP270 | chr15_94883526_94884639 | 501 | 614 | rs8025851 | chr15_94883526_94884639:583 | G | C | 114 | 83 | 33 | False |
| IISNP271 | chr16_16278312_16279424 | 501 | 613 | rs8058696 | chr16_16278312_16279424:558 | G | C | 113 | 58 | 32 | True |
| IISNP272 | chr17_48625341_48626470 | 501 | 630 | rs8076632 | chr17_48625341_48626470:588 | C | G | 130 | 88 | 49 | False |
| IISNP273 | chr16_8952508_8953628 | 501 | 621 | rs8097 | chr16_8952508_8953628:574 | C | G | 121 | 74 | 40 | True |
| IISNP274 | chr19_18377056_18378185 | 501 | 630 | rs8103906 | chr19_18377056_18378185:592 | G | C | 130 | 92 | 49 | False |
| IISNP275 | chr1_17659939_17661046 | 501 | 608 | rs874881 | chr1_17659939_17661046:561 | G | C | 108 | 61 | 27 | True |
| IISNP276 | chr12_88440104_88441233 | 501 | 630 | rs9262 | chr12_88440104_88441233:573 | G | C | 130 | 73 | 49 | True |
| IISNP277 | chr3_118866464_118867580 | 501 | 617 | rs9289122 | chr3_118866464_118867580:584 | C | G | 117 | 84 | 36 | False |
| IISNP278 | chr17_42475406_42476535 | 501 | 630 | rs936019 | chr17_42475406_42476535:578 | G | C | 130 | 78 | 49 | True |
| IISNP279 | chr6_26508757_26509875 | 501 | 619 | rs9393728 | chr6_26508757_26509875:574 | C | G | 119 | 74 | 38 | True |
| IISNP28 | chr2_10085153_10086253 | 501 | 601 | rs1109037 | chr2_10085153_10086253:570 | G | A | 101 | 70 | 20 | True |
| IISNP280 | chr11_60700573_60701681 | 501 | 609 | rs9513 | chr11_60700573_60701681:564 | C | G | 109 | 64 | 28 | True |
| IISNP281 | chr19_56422500_56423625 | 501 | 626 | rs977070 | chr19_56422500_56423625:575 | C | G | 126 | 75 | 45 | True |
| IISNP282 | chr3_112642035_112643149 | 501 | 615 | rs9865242 | chr3_112642035_112643149:534 | C | G | 115 | 34 | 34 | False |
| IISNP29 | chr20_16240863_16241962 | 501 | 600 | rs12480506 | chr20_16240863_16241962:554 | A | G | 100 | 54 | 19 | True |
| IISNP3 | chr1_160786113_160787219 | 501 | 607 | rs560681 | chr1_160786113_160787219:558 | A | G | 107 | 58 | 26 | True |
| IISNP30 | chr2_182412681_182413789 | 501 | 609 | rs12997453 | chr2_182412681_182413789:579 | A | G | 109 | 79 | 28 | True |
| IISNP31 | chr4_76425332_76426441 | 501 | 610 | rs13134862 | chr4_76425332_76426441:565 | G | A | 110 | 65 | 29 | True |
| IISNP32 | chr6_12059397_12060504 | 501 | 608 | rs13218440 | chr6_12059397_12060504:558 | G | A | 108 | 58 | 27 | True |
| IISNP33 | chr6_94536699_94537824 | 501 | 626 | rs1336071 | chr6_94536699_94537824:557 | T | C | 126 | 57 | 45 | True |
| IISNP34 | chr6_123894407_123895512 | 501 | 606 | rs1358856 | chr6_123894407_123895512:572 | C | A | 106 | 72 | 25 | True |
| IISNP35 | chr10_97172060_97173166 | 501 | 607 | rs1410059 | chr10_97172060_97173166:536 | T | C | 107 | 36 | 26 | True |
| IISNP36 | chr6_120560128_120561231 | 501 | 604 | rs1478829 | chr6_120560128_120561231:567 | T | A | 104 | 67 | 23 | True |
| IISNP37 | chr1_4366758_4367875 | 501 | 618 | rs1490413 | chr1_4366758_4367875:566 | G | A | 118 | 66 | 37 | True |
| IISNP38 | chr11_5708471_5709577 | 501 | 607 | rs1498553 | chr11_5708471_5709577:558 | C | T | 107 | 58 | 26 | True |
| IISNP39 | chr20_51295583_51296712 | 501 | 630 | rs1523537 | chr20_51295583_51296712:580 | T | C | 130 | 80 | 49 | True |
| IISNP4 | chr8_144656177_144657285 | 501 | 609 | rs4606077 | chr8_144656177_144657285:578 | T | C | 109 | 78 | 28 | True |
| IISNP40 | chr4_157489335_157490443 | 501 | 609 | rs1554472 | chr4_157489335_157490443:572 | G | A | 109 | 72 | 28 | True |
| IISNP41 | chr18_55225209_55226308 | 501 | 600 | rs1736442 | chr18_55225209_55226308:569 | T | C | 100 | 69 | 19 | True |
| IISNP42 | chr15_39312848_39313954 | 501 | 607 | rs1821380 | chr15_39312848_39313954:555 | C | G | 107 | 55 | 26 | True |
| IISNP43 | chr4_10968504_10969612 | 501 | 609 | rs2046361 | chr4_10968504_10969612:556 | T | A | 109 | 56 | 28 | True |
| IISNP44 | chr22_23801605_23802709 | 501 | 605 | rs2073383 | chr22_23801605_23802709:567 | T | C | 105 | 67 | 24 | True |
| IISNP45 | chr6_152697130_152698240 | 501 | 611 | rs214955 | chr6_152697130_152698240:577 | C | T | 111 | 77 | 30 | True |
| IISNP46 | chr17_41286243_41287360 | 501 | 618 | rs2175957 | chr17_41286243_41287360:580 | T | G | 118 | 80 | 37 | True |
| IISNP47 | chr12_6908891_6910000 | 501 | 610 | rs2255301 | chr12_6908891_6910000:552 | T | C | 110 | 52 | 29 | True |
| IISNP48 | chr12_6945352_6946456 | 501 | 605 | rs2269355 | chr12_6945352_6946456:563 | C | G | 105 | 63 | 24 | True |
| IISNP49 | chr9_14746585_14747714 | 501 | 630 | rs2270529 | chr9_14746585_14747714:549 | T | C | 130 | 49 | 49 | False |
| IISNP5 | chr12_40862467_40863585 | 501 | 619 | rs2920816 | chr12_40862467_40863585:586 | A | G | 119 | 86 | 38 | False |
| IISNP50 | chr6_148760890_148761999 | 501 | 610 | rs2272998 | chr6_148760890_148761999:567 | G | C | 110 | 67 | 29 | True |
| IISNP51 | chr17_80525564_80526669 | 501 | 606 | rs2291395 | chr17_80525564_80526669:576 | A | G | 106 | 76 | 25 | True |
| IISNP52 | chr17_80765219_80766321 | 501 | 603 | rs2292972 | chr17_80765219_80766321:570 | T | C | 103 | 70 | 22 | True |
| IISNP53 | chr3_110300565_110301664 | 501 | 600 | rs2399332 | chr3_110300565_110301664:562 | T | G | 100 | 62 | 19 | True |
| IISNP54 | chr6_127462805_127463913 | 501 | 609 | rs2503107 | chr6_127462805_127463913:572 | C | A | 109 | 72 | 28 | True |
| IISNP55 | chr20_23016527_23017635 | 501 | 609 | rs2567608 | chr20_23016527_23017635:556 | T | C | 109 | 56 | 28 | True |
| IISNP56 | chr6_55155134_55156239 | 501 | 606 | rs2811231 | chr6_55155134_55156239:571 | C | A | 106 | 71 | 25 | True |
| IISNP57 | chr21_33582165_33583274 | 501 | 610 | rs2833736 | chr21_33582165_33583274:558 | G | A | 110 | 58 | 29 | True |
| IISNP58 | chr5_169735367_169736476 | 501 | 610 | rs315791 | chr5_169735367_169736476:554 | A | C | 110 | 54 | 29 | True |
| IISNP59 | chr7_137029274_137030380 | 501 | 607 | rs321198 | chr7_137029274_137030380:565 | T | C | 107 | 65 | 26 | True |
| IISNP6 | chr7_4309792_4310920 | 501 | 629 | rs6955448 | chr7_4309792_4310920:574 | C | T | 129 | 74 | 48 | True |
| IISNP60 | chr5_178690152_178691259 | 501 | 608 | rs338882 | chr5_178690152_178691259:574 | G | A | 108 | 74 | 27 | True |
| IISNP61 | chr17_80739299_80740406 | 501 | 608 | rs3744163 | chr17_80739299_80740406:561 | G | C | 108 | 61 | 27 | True |
| IISNP62 | chr10_17192789_17193898 | 501 | 610 | rs3780962 | chr10_17192789_17193898:558 | A | G | 110 | 58 | 29 | True |
| IISNP63 | chr8_136838646_136839775 | 501 | 630 | rs4288409 | chr8_136838646_136839775:584 | A | C | 130 | 84 | 49 | False |
| IISNP64 | chr14_104768569_104769678 | 501 | 610 | rs4530059 | chr14_104768569_104769678:581 | G | A | 110 | 81 | 29 | True |
| IISNP65 | chr21_28022802_28023902 | 501 | 601 | rs464663 | chr21_28022802_28023902:569 | T | C | 101 | 69 | 20 | True |
| IISNP66 | chr17_80531082_80532207 | 501 | 626 | rs4789798 | chr17_80531082_80532207:562 | C | G | 126 | 62 | 45 | True |
| IISNP67 | chr17_6810940_6812066 | 501 | 627 | rs4796362 | chr17_6810940_6812066:590 | G | A | 127 | 90 | 46 | False |
| IISNP68 | chr1_105717077_105718184 | 501 | 608 | rs4847034 | chr1_105717077_105718184:555 | A | G | 108 | 55 | 27 | True |
| IISNP69 | chr18_47370442_47371541 | 501 | 600 | rs521861 | chr18_47370442_47371541:573 | C | G | 100 | 73 | 19 | True |
| IISNP7 | chr13_100037637_100038761 | 501 | 625 | rs1058083 | chr13_100037637_100038761:597 | A | G | 125 | 97 | 44 | False |
| IISNP70 | chr22_19920061_19921192 | 501 | 632 | rs5746846 | chr22_19920061_19921192:586 | C | G | 132 | 86 | 51 | False |
| IISNP71 | chr11_122195414_122196543 | 501 | 630 | rs590162 | chr11_122195414_122196543:576 | C | T | 130 | 76 | 49 | True |
| IISNP72 | chr3_193206814_193207921 | 501 | 608 | rs6444724 | chr3_193206814_193207921:567 | T | C | 108 | 67 | 27 | True |
| IISNP73 | chr11_105912429_105913529 | 501 | 601 | rs6591147 | chr11_105912429_105913529:556 | T | C | 101 | 56 | 20 | True |
| IISNP74 | chr17_80715140_80716246 | 501 | 607 | rs689512 | chr17_80715140_80716246:563 | G | C | 107 | 63 | 26 | True |
| IISNP75 | chr16_7519685_7520809 | 501 | 625 | rs7205345 | chr16_7519685_7520809:570 | C | G | 125 | 70 | 44 | True |
| IISNP76 | chr14_53216148_53217276 | 501 | 629 | rs722290 | chr14_53216148_53217276:576 | G | C | 129 | 76 | 48 | True |
| IISNP77 | chr18_22738427_22739556 | 501 | 630 | rs7229946 | chr18_22738427_22739556:575 | G | A | 130 | 75 | 49 | True |
| IISNP78 | chr10_118506324_118507433 | 501 | 610 | rs740598 | chr10_118506324_118507433:576 | G | A | 110 | 76 | 29 | True |
| IISNP79 | chr1_14154833_14155962 | 501 | 630 | rs7520386 | chr1_14154833_14155962:570 | G | A | 130 | 70 | 49 | True |
| IISNP8 | chr21_43606463_43607573 | 501 | 611 | rs221956 | chr21_43606463_43607573:535 | T | C | 111 | 35 | 30 | True |
| IISNP80 | chr5_159487382_159488507 | 501 | 626 | rs7704770 | chr5_159487382_159488507:572 | G | A | 126 | 72 | 45 | True |
| IISNP81 | chr17_41341424_41342523 | 501 | 600 | rs8070085 | chr17_41341424_41342523:561 | A | G | 100 | 61 | 19 | True |
| IISNP82 | chr17_80461344_80462465 | 501 | 622 | rs8078417 | chr17_80461344_80462465:592 | C | T | 122 | 92 | 41 | False |
| IISNP83 | chr1_239881353_239882471 | 501 | 619 | rs891700 | chr1_239881353_239882471:574 | A | G | 119 | 74 | 38 | True |
| IISNP84 | chr11_11095660_11096769 | 501 | 610 | rs901398 | chr11_11095660_11096769:562 | C | T | 110 | 62 | 29 | True |
| IISNP85 | chr13_84456181_84457286 | 501 | 606 | rs9546538 | chr13_84456181_84457286:555 | T | C | 106 | 55 | 25 | True |
| IISNP86 | chr22_19919790_19920889 | 501 | 600 | rs9606186 | chr22_19919790_19920889:570 | C | G | 100 | 70 | 19 | True |
| IISNP87 | chr18_29310484_29311587 | 501 | 604 | rs985492 | chr18_29310484_29311587:551 | G | A | 104 | 51 | 23 | True |
| IISNP88 | chr3_59487752_59488863 | 501 | 612 | rs9866013 | chr3_59487752_59488863:589 | T | C | 112 | 89 | 31 | False |
| IISNP89 | chr22_33558944_33560052 | 501 | 609 | rs987640 | chr22_33558944_33560052:565 | T | A | 109 | 65 | 28 | True |
| IISNP9 | chr5_136632784_136633892 | 501 | 609 | rs13182883 | chr5_136632784_136633892:555 | G | A | 109 | 55 | 28 | True |
| IISNP90 | chr17_2918812_2919921 | 501 | 610 | rs9905977 | chr17_2918812_2919921:582 | A | G | 110 | 82 | 29 | True |
| IISNP91 | chr2_124108634_124109748 | 501 | 615 | rs993934 | chr2_124108634_124109748:580 | A | G | 115 | 80 | 34 | True |
| IISNP92 | chr18_9749309_9750416 | 501 | 608 | rs9951171 | chr18_9749309_9750416:571 | G | A | 108 | 71 | 27 | True |
| IISNP93 | chr7_47924777_47925902 | 501 | 626 | rs10274334 | chr7_47924777_47925902:555 | C | G | 126 | 55 | 45 | True |
| IISNP94 | chr19_57085220_57086327 | 501 | 608 | rs10421285 | chr19_57085220_57086327:550 | G | C | 108 | 50 | 27 | True |
| IISNP95 | chr19_41938759_41939869 | 501 | 611 | rs1043413 | chr19_41938759_41939869:539 | C | G | 111 | 39 | 30 | True |
| IISNP96 | chr1_19447280_19448406 | 501 | 627 | rs1044010 | chr1_19447280_19448406:564 | C | G | 127 | 64 | 46 | True |
| IISNP97 | chr8_142203762_142204884 | 501 | 623 | rs1045248 | chr8_142203762_142204884:565 | C | G | 123 | 65 | 42 | True |
| IISNP98 | chr14_31354504_31355624 | 501 | 621 | rs1045644 | chr14_31354504_31355624:593 | C | G | 121 | 93 | 40 | False |
| IISNP99 | chr11_58318053_58319181 | 501 | 629 | rs1047979 | chr11_58318053_58319181:567 | C | G | 129 | 67 | 48 | True |
282 rows × 11 columns
afreq_nans = all_SNP.ix[(all_SNP.SNPPASSQC) & (all_SNP.ADJUSTEDFREQUENCY.isnull())].index.unique()
print(list(sorted(afreq_nans)))
['17-a1-h1-b1', '18-a1-h1-b1', '19-a1-h1-b1', '20-a1-h1-b1', '21-a1-h1-b1', '22-a1-h1-b1', '23-a1-h1-b1', '24-a1-h1-b1', '25-a1-h1-b1', '26-a1-h1-b1', '27-a1-h1-b1', '28-a1-h1-b1', '29-a1-h1-b1', '30-a1-h1-b1', '31-a1-h1-b1', '32-a1-h1-b1', '878-879-01', '878-879-02', '878-879-03', '878-879-04', '878-879-05', '878-879-06', '878-879-07', '878-879-08', '878-879-09', '878-882-01', '878-882-02', '878-882-03', '878-882-04', '878-882-05', '878-882-06', '878-882-07', '878-882-08', '878-882-09', '878-890-01', '878-890-02', '878-890-03', '878-890-04', '878-890-05', '878-890-06', '878-890-07', '878-890-08', '878-890-09', 'A150521Aa', 'A150521Ab', 'A150521Ba', 'A150521Bb', 'A150521Ca', 'A150521Cb', 'A150521Da', 'A150521Db', 'A150522Ea', 'A150522Eb', 'A150529Fa', 'A150529Fb', 'A150529Fcd', 'AB07-52-38', 'AI96-92-01', 'AK22-50-91', 'AL62-25-54', 'AS41-44-54', 'AVBlank-Aug-20-15', 'AVBlank-Aug-21-15', 'AVBlank-Aug-26-15', 'AVBlank-Aug-28-15', 'AVBlank-Aug-31-15', 'AVBlank-Sep-15-15', 'AVBlank-Sep-16-15', 'AVBlank-Sep-17-15', 'AVBlank-Sep-18-15', 'AVBlank-Sep-4-15', 'AVBlank-Sep-9-15', 'AVBlank-c-Sep-3-15', 'AVHigh1-Aug-20-15', 'AVHigh1-Aug-21-15', 'AVHigh1-Aug-26-15', 'AVHigh1-Aug-28-15', 'AVHigh1-Aug-31-15', 'AVHigh1-Sep-15-15', 'AVHigh1-Sep-16-15', 'AVHigh1-Sep-17-15', 'AVHigh1-Sep-18-15', 'AVHigh1-Sep-4-15', 'AVHigh1-Sep-9-15', 'AVHigh1-c-Sep-3-15', 'AVHigh2-Aug-20-15', 'AVHigh2-Aug-21-15', 'AVHigh2-Aug-26-15', 'AVHigh2-Aug-28-15', 'AVHigh2-Aug-31-15', 'AVHigh2-Sep-15-15', 'AVHigh2-Sep-16-15', 'AVHigh2-Sep-17-15', 'AVHigh2-Sep-18-15', 'AVHigh2-Sep-4-15', 'AVHigh2-Sep-9-15', 'AVHigh2-c-Sep-3-15', 'AVLow1-Aug-20-15', 'AVLow1-Aug-21-15', 'AVLow1-Aug-26-15', 'AVLow1-Aug-28-15', 'AVLow1-Aug-31-15', 'AVLow1-Sep-15-15', 'AVLow1-Sep-16-15', 'AVLow1-Sep-17-15', 'AVLow1-Sep-18-15', 'AVLow1-Sep-4-15', 'AVLow1-Sep-9-15', 'AVLow1-c-Sep-3-15', 'AVLow2-Aug-20-15', 'AVLow2-Aug-21-15', 'AVLow2-Aug-26-15', 'AVLow2-Aug-28-15', 'AVLow2-Aug-31-15', 'AVLow2-Sep-15-15', 'AVLow2-Sep-16-15', 'AVLow2-Sep-18-15', 'AVLow2-Sep-4-15', 'AVLow2-Sep-9-15', 'AVLow2-c-Sep-3-15', 'AVStreck0001-Aug-20-15', 'AVStreck0001-Aug-21-15', 'AVStreck0001-Aug-26-15', 'AVStreck0001-Aug-28-15', 'AVStreck0001-Aug-31-15', 'AVStreck0001-Sep-18-15', 'Aa', 'Ab', 'BJ06-11-07', 'BM48-78-43', 'BN30-68-87', 'BP02-02-48', 'BT99-10-22', 'Ba', 'Bb', 'C4-5-5-1-Aug-13-15', 'C4-5-5-2-Aug-13-15', 'C4-5-5-3-Aug-13-15', 'C4-5-7-1-Aug-13-15', 'C4-5-7-2-Aug-13-15', 'C4-5-7-3-Aug-13-15', 'C4-5-9-1-Aug-13-15', 'C4-5-9-2-Aug-13-15', 'C4-5-9-3-Aug-13-15', 'C5-5-5-1-Aug-13-15', 'C5-5-5-2-Aug-13-15', 'C5-5-7-1-Aug-13-15', 'C5-5-7-2-Aug-13-15', 'C5-5-7-3-Aug-13-15', 'C5-5-9-1-Aug-13-15', 'C5-5-9-2-Aug-13-15', 'CA02-87-78', 'CA91-50-33', 'CI78-80-72', 'CO59-99-45', 'CX79-19-15', 'CY32-38-29', 'CY90-45-41', 'CY97-97-83', 'CZ06-72-39', 'Ca', 'DD67-88-05', 'DE45-89-82', 'DLS-2010824-a1-h1-b1', 'DLS-2012024-a1-h1-b1', 'DLS-2020824-a1-h1-b1', 'DLS-2030824-a1-h1-b1', 'DLS-2032024-a1-h1-b1', 'DLS-2040824-a1-h1-b1', 'DLS-2050824-a1-h1-b1', 'DLS-2052024-a1-h1-b1', 'DLS-2060824-a1-h1-b1', 'DLS-2070824-a1-h1-b1', 'DLS-2072024-a1-h1-b1', 'DLS-2080824-a1-h1-b1', 'DLS-2090824-a1-h1-b1', 'DLS-2092024-a1-h1-b1', 'DLS-2100824-a1-h1-b1', 'DLS-2110824-a1-h1-b1', 'DLS4-1-0-A1-a1-h1-b1', 'DLS4-1-0-A2-a1-h1-b1', 'DLS4-1-0-B1-a1-h1-b1', 'DLS4-1-0-B2-a1-h1-b1', 'DLS4-1-0-C1-a1-h1-b1', 'DLS4-1-0-C2-a1-h1-b1', 'DLS4-1-0-D1-a1-h1-b1', 'DLS4-1-0-D2-a1-h1-b1', 'DLS4-1-0-E1-a1-h1-b1', 'DLS4-1-0-E2-a1-h1-b1', 'DLS4-1-0p5-A1-a1-h1-b1', 'DLS4-1-0p5-A2-a1-h1-b1', 'DLS4-1-0p5-B1-a1-h1-b1', 'DLS4-1-0p5-B2-a1-h1-b1', 'DLS4-1-0p5-C1-a1-h1-b1', 'DLS4-1-0p5-C2-a1-h1-b1', 'DLS4-1-0p5-C3-a1-h1-b1', 'DLS4-1-0p5-D1-a1-h1-b1', 'DLS4-1-0p5-D2-a1-h1-b1', 'DLS4-1-0p5-D3-a1-h1-b1', 'DLS4-1-0p5-E1-a1-h1-b1', 'DLS4-1-0p5-E2-a1-h1-b1', 'DLS4-1-0p5-E3-a1-h1-b1', 'DLS4-1-1', 'DLS4-1-1-A1-a1-h1-b1', 'DLS4-1-1-A2-a1-h1-b1', 'DLS4-1-1-B1-a1-h1-b1', 'DLS4-1-1-B2-a1-h1-b1', 'DLS4-1-1-C1-a1-h1-b1', 'DLS4-1-1-C2-a1-h1-b1', 'DLS4-1-1-D1-a1-h1-b1', 'DLS4-1-1-D2-a1-h1-b1', 'DLS4-1-1-E1-a1-h1-b1', 'DLS4-1-1-E2-a1-h1-b1', 'DLS4-1-100', 'DLS4-1-100-A1-a1-h1-b1', 'DLS4-1-100-A2-a1-h1-b1', 'DLS4-1-100-B1-a1-h1-b1', 'DLS4-1-100-B2-a1-h1-b1', 'DLS4-1-100-C1-a1-h1-b1', 'DLS4-1-100-C2-a1-h1-b1', 'DLS4-1-100-D1-a1-h1-b1', 'DLS4-1-100-D2-a1-h1-b1', 'DLS4-1-100-E1-a1-h1-b1', 'DLS4-1-100-E2-a1-h1-b1', 'DLS4-1-3-A1-a1-h1-b1', 'DLS4-1-3-A2-a1-h1-b1', 'DLS4-1-3-B1-a1-h1-b1', 'DLS4-1-3-B2-a1-h1-b1', 'DLS4-1-3-C1-a1-h1-b1', 'DLS4-1-3-C2-a1-h1-b1', 'DLS4-1-3-C3-a1-h1-b1', 'DLS4-1-3-D1-a1-h1-b1', 'DLS4-1-3-D2-a1-h1-b1', 'DLS4-1-3-D3-a1-h1-b1', 'DLS4-1-3-E1-a1-h1-b1', 'DLS4-1-3-E2-a1-h1-b1', 'DLS4-1-3-E3-a1-h1-b1', 'DLS4-2-0-B1-a1-h1-b1', 'DLS4-2-0-C1-a1-h1-b1', 'DLS4-2-0-D1-a1-h1-b1', 'DLS4-2-0-E1-a1-h1-b1', 'DLS4-2-0p5-B1-a1-h1-b1', 'DLS4-2-0p5-C1-a1-h1-b1', 'DLS4-2-0p5-D1-a1-h1-b1', 'DLS4-2-0p5-E1-a1-h1-b1', 'DLS4-2-100-B1-a1-h1-b1', 'DLS4-2-3-B1-a1-h1-b1', 'DV34-91-66', 'DX42-81-71', 'DX45-46-01', 'Da', 'EG35-12-76', 'EL30-36-39', 'EQ67-17-22', 'ES05-71-07', 'EX69-26-00', 'Ea', 'Eb', 'FG78-35-13', 'FL75-72-86', 'FN44-92-67', 'FR49-24-67', 'FR65-60-84', 'FT60-19-49', 'FT95-21-33', 'FZ88-59-94', 'Fa', 'Fb', 'GB61-23-72', 'GG40-39-07', 'GG99-38-50', 'GN50-37-27', 'GN55-85-68', 'GQ81-80-24', 'GZ96-86-33', 'Ga', 'HC87-23-78', 'HD-418-01-a1-h1-b1', 'HD-418-02-a1-h1-b1', 'HD-418-03-a1-h1-b1', 'HD-418-04-a1-h1-b1', 'HD-418-05-a1-h1-b1', 'HD-418-06-a1-h1-b1', 'HD-418-07-a1-h1-b1', 'HD-418-08-a1-h1-b1', 'HD-418-09-a1-h1-b1', 'HD-418-10-a1-h1-b1', 'HD-418-11-a1-h1-b1', 'HD-418-12-a1-h1-b1', 'HD-418-13-a1-h1-b1', 'HD-418-14-a1-h1-b1', 'HD-418-15-a1-h1-b1', 'HD-418-16-a1-h1-b1', 'HD-441-02-a1-h1-b1', 'HD-441-03-a1-h1-b1', 'HD-441-04-a1-h1-b1', 'HD-441-05-a1-h1-b1', 'HD-441-06-a1-h1-b1', 'HD-441-07-a1-h1-b1', 'HD-441-08-a1-h1-b1', 'HD-441-09-a1-h1-b1', 'HD-441-10-a1-h1-b1', 'HD-441-11-a1-h1-b1', 'HD-441-12-a1-h1-b1', 'HD-441-13-a1-h1-b1', 'HD-441-14-a1-h1-b1', 'HD-441-15-a1-h1-b1', 'HD-441-16-a1-h1-b1', 'HD-441-17-a1-h1-b1', 'HH45-40-34', 'HP51-95-01', 'HRZ-3-5-a1-h1-b1', 'HRZ-3-7-a1-h1-b1', 'HRZ-5-1-F1-a1-h1-b1', 'HRZ-5-1-F2-a1-h1-b1', 'HRZ-5-1-G1-a1-h1-b1', 'HRZ-5-1-G2-a1-h1-b1', 'HRZ-5-1-H1-a1-h1-b1', 'HRZ-5-1-H2-a1-h1-b1', 'HRZ-5-1-I1-a1-h1-b1', 'HRZ-5-1-I2-a1-h1-b1', 'HRZ-5-1-J1-a1-h1-b1', 'HRZ-5-1-J2-a1-h1-b1', 'HRZ-5-2-F2-a1-h1-b1', 'HRZ-5-2-G2-a1-h1-b1', 'HRZ-5-2-H2-a1-h1-b1', 'HRZ-5-2-I2-a1-h1-b1', 'HRZ-5-2-J2-a1-h1-b1', 'HRZ-5-4-F2-a1-h1-b1', 'HRZ-5-4-G2-a1-h1-b1', 'HRZ-5-4-H2-a1-h1-b1', 'HRZ-5-4-I2-a1-h1-b1', 'HRZ-5-4-J2-a1-h1-b1', 'HRZ-5-6-F2-a1-h1-b1', 'HRZ-5-6-G2-a1-h1-b1', 'HRZ-5-6-H2-a1-h1-b1', 'HRZ-5-6-I2-a1-h1-b1', 'HRZ-5-6-J2-a1-h1-b1', 'HRZ-6-3-O1-a1-h1-b1', 'HRZ-6-6-M1-a1-h1-b1', 'HRZ-6-6-N1-a1-h1-b1', 'HRZ-6-6-O1-a1-h1-b1', 'HRZ-601-03-27', 'HRZ-601-03-28', 'HRZ-601-03-29', 'HRZ-601-08-27', 'HRZ-601-08-28', 'HRZ-601-08-29', 'HRZ-602-03-26', 'HRZ-602-03-27', 'HRZ-602-03-28', 'HRZ-602-03-29', 'HRZ-602-08-26', 'HRZ-602-08-27', 'HRZ-602-08-28', 'HRZ-602-08-29', 'HRZ-603-03-26', 'HRZ-603-03-27', 'HRZ-603-03-28', 'HRZ-603-03-29', 'HRZ-603-08-26', 'HRZ-603-08-27', 'HRZ-603-08-28', 'HRZ-603-08-29', 'HRZ-604-03-26', 'HRZ-604-03-27', 'HRZ-604-03-28', 'HRZ-604-03-29', 'HRZ-604-08-26', 'HRZ-604-08-27', 'HRZ-604-08-28', 'HRZ-604-08-29', 'HRZ-605-03-26', 'HRZ-605-03-27', 'HRZ-605-03-28', 'HRZ-605-03-29', 'HRZ-605-08-26', 'HRZ-605-08-27', 'HRZ-605-08-28', 'HRZ-605-08-29', 'HRZ-606-03-26', 'HRZ-606-03-27', 'HRZ-606-03-28', 'HRZ-606-03-29', 'HRZ-606-08-26', 'HRZ-606-08-27', 'HRZ-606-08-28', 'HRZ-606-08-29', 'HRZ-607-03-26', 'HRZ-607-03-27', 'HRZ-607-03-28', 'HRZ-607-03-29', 'HRZ-607-08-26', 'HRZ-607-08-27', 'HRZ-607-08-28', 'HRZ-607-08-29', 'HRZ-608-03-26', 'HRZ-608-03-27', 'HRZ-608-03-28', 'HRZ-608-03-29', 'HRZ-608-08-26', 'HRZ-608-08-27', 'HRZ-608-08-28', 'HRZ-608-08-29', 'HRZ-609-03-26', 'HRZ-609-03-28', 'HRZ-609-03-29', 'HRZ-609-08-26', 'HRZ-609-08-28', 'HRZ-609-08-29', 'HRZ-7-1-a', 'HRZ-7-3-M1-a1-h1-b1', 'HRZ-7-3-N1-a1-h1-b1', 'HRZ-7-3-O1-a1-h1-b1', 'HRZ-7-3-a', 'HRZ-7-6-M1-a1-h1-b1', 'HRZ-7-6-N1-a1-h1-b1', 'HRZ-7-6-O1-a1-h1-b1', 'HRZ-7-6-a', 'HRZ-701-03-26', 'HRZ-701-03-27', 'HRZ-701-03-29', 'HRZ-701-08-26', 'HRZ-701-08-27', 'HRZ-701-08-29', 'HRZ-702-03-26', 'HRZ-702-03-27', 'HRZ-702-03-28', 'HRZ-702-03-29', 'HRZ-702-08-26', 'HRZ-702-08-27', 'HRZ-702-08-28', 'HRZ-702-08-29', 'HRZ-703-03-26', 'HRZ-703-03-27', 'HRZ-703-03-28', 'HRZ-703-03-29', 'HRZ-703-08-26', 'HRZ-703-08-27', 'HRZ-703-08-28', 'HRZ-703-08-29', 'HRZ-704-03-26', 'HRZ-704-03-27', 'HRZ-704-03-28', 'HRZ-704-03-29', 'HRZ-704-08-26', 'HRZ-704-08-27', 'HRZ-704-08-28', 'HRZ-704-08-29', 'HRZ-705-03-26', 'HRZ-705-03-27', 'HRZ-705-03-28', 'HRZ-705-03-29', 'HRZ-705-08-26', 'HRZ-705-08-27', 'HRZ-705-08-28', 'HRZ-705-08-29', 'HRZ-706-03-26', 'HRZ-706-03-27', 'HRZ-706-03-28', 'HRZ-706-03-29', 'HRZ-706-08-26', 'HRZ-706-08-27', 'HRZ-706-08-28', 'HRZ-706-08-29', 'HRZ-707-03-26', 'HRZ-707-03-27', 'HRZ-707-03-28', 'HRZ-707-03-29', 'HRZ-707-08-26', 'HRZ-707-08-27', 'HRZ-707-08-28', 'HRZ-707-08-29', 'HRZ-708-03-26', 'HRZ-708-03-27', 'HRZ-708-03-28', 'HRZ-708-03-29', 'HRZ-708-08-26', 'HRZ-708-08-27', 'HRZ-708-08-29', 'HRZ-8-3-M1-a1-h1-b1', 'HRZ-8-3-N1-a1-h1-b1', 'HRZ-8-3-O1-a1-h1-b1', 'HRZ-8-6-M1-a1-h1-b1', 'HRZ-8-6-N1-a1-h1-b1', 'HRZ-8-6-O1-a1-h1-b1', 'HRZ-801-03-26', 'HRZ-801-03-27', 'HRZ-801-03-28', 'HRZ-801-08-26', 'HRZ-801-08-27', 'HRZ-801-08-28', 'HRZ-801A-00-1', 'HRZ-801A-00-2', 'HRZ-801A-05-1', 'HRZ-801A-05-2', 'HRZ-801A-10-1', 'HRZ-801A-10-2', 'HRZ-801A-30-1', 'HRZ-801A-30-2', 'HRZ-802-03-26', 'HRZ-802-03-27', 'HRZ-802-03-28', 'HRZ-802-03-29', 'HRZ-802-08-26', 'HRZ-802-08-27', 'HRZ-802-08-28', 'HRZ-802-08-29', 'HRZ-803-03-26', 'HRZ-803-03-27', 'HRZ-803-03-28', 'HRZ-803-03-29', 'HRZ-803-08-26', 'HRZ-803-08-27', 'HRZ-803-08-28', 'HRZ-803-08-29', 'HRZ-804-03-26', 'HRZ-804-03-27', 'HRZ-804-03-28', 'HRZ-804-03-29', 'HRZ-804-08-26', 'HRZ-804-08-27', 'HRZ-804-08-28', 'HRZ-804-08-29', 'HRZ-805-03-26', 'HRZ-805-03-27', 'HRZ-805-03-28', 'HRZ-805-03-29', 'HRZ-805-08-26', 'HRZ-805-08-27', 'HRZ-805-08-28', 'HRZ-805-08-29', 'HRZ-806-03-26', 'HRZ-806-03-27', 'HRZ-806-03-28', 'HRZ-806-03-29', 'HRZ-806-08-26', 'HRZ-806-08-27', 'HRZ-806-08-28', 'HRZ-806-08-29', 'HRZ-807-03-26', 'HRZ-807-03-27', 'HRZ-807-03-28', 'HRZ-807-03-29', 'HRZ-807-08-26', 'HRZ-807-08-27', 'HRZ-807-08-28', 'HRZ-807-08-29', 'HRZ-808-03-26', 'HRZ-808-03-27', 'HRZ-808-03-28', 'HRZ-808-03-29', 'HRZ-808-08-26', 'HRZ-808-08-27', 'HRZ-808-08-28', 'HRZ-808-08-29', 'HRZ-8a-1-0-a', 'HRZ-8a-1-0-b', 'HRZ-8a-1-1-a', 'HRZ-8a-1-1-b', 'HRZ-8a-1-3-a', 'HRZ-8a-1-3-b', 'HRZ-8a-105-a', 'HRZ-8a-105-b', 'HRZ-cntrl-1', 'HRZ-cntrl-3', 'HRZ0060203-Aug-20-15', 'HRZ0060203-Aug-21-15', 'HRZ0060203-Aug-26-15', 'HRZ0060203-Aug-28-15', 'HRZ0060203-Aug-31-15', 'HRZ0060203-Sep-15-15', 'HRZ0060203-Sep-16-15', 'HRZ0060203-Sep-17-15', 'HRZ0060203-Sep-18-15', 'HRZ0060203-Sep-4-15', 'HRZ0060203-Sep-9-15', 'HRZ0060203-c-Sep-3-15', 'HRZ0060208-Aug-20-15', 'HRZ0060208-Aug-21-15', 'HRZ0060208-Aug-26-15', 'HRZ0060208-Aug-28-15', 'HRZ0060208-Aug-31-15', 'HRZ0060208-Sep-15-15', 'HRZ0060208-Sep-16-15', 'HRZ0060208-Sep-17-15', 'HRZ0060208-Sep-18-15', 'HRZ0060208-Sep-4-15', 'HRZ0060208-Sep-9-15', 'HRZ0060208-c-Sep-3-15', 'HRZ0060303-Aug-20-15', 'HRZ0060303-Aug-21-15', 'HRZ0060303-Aug-26-15', 'HRZ0060303-Aug-28-15', 'HRZ0060303-Aug-31-15', 'HRZ0060303-Sep-15-15', 'HRZ0060303-Sep-16-15', 'HRZ0060303-Sep-17-15', 'HRZ0060303-Sep-18-15', 'HRZ0060303-Sep-4-15', 'HRZ0060303-Sep-9-15', 'HRZ0060303-c-Sep-3-15', 'HRZ0060308-Aug-20-15', 'HRZ0060308-Aug-21-15', 'HRZ0060308-Aug-26-15', 'HRZ0060308-Aug-28-15', 'HRZ0060308-Aug-31-15', 'HRZ0060308-Sep-15-15', 'HRZ0060308-Sep-16-15', 'HRZ0060308-Sep-17-15', 'HRZ0060308-Sep-18-15', 'HRZ0060308-Sep-4-15', 'HRZ0060308-Sep-9-15', 'HRZ0060308-c-Sep-3-15', 'HRZ0060403-Aug-20-15', 'HRZ0060403-Aug-21-15', 'HRZ0060403-Aug-26-15', 'HRZ0060403-Aug-28-15', 'HRZ0060403-Aug-31-15', 'HRZ0060403-Sep-15-15', 'HRZ0060403-Sep-16-15', 'HRZ0060403-Sep-17-15', 'HRZ0060403-Sep-18-15', 'HRZ0060403-Sep-4-15', 'HRZ0060403-Sep-9-15', 'HRZ0060403-c-Sep-3-15', 'HRZ0060408-Aug-20-15', 'HRZ0060408-Aug-21-15', 'HRZ0060408-Aug-26-15', 'HRZ0060408-Aug-28-15', 'HRZ0060408-Aug-31-15', 'HRZ0060408-Sep-15-15', 'HRZ0060408-Sep-16-15', 'HRZ0060408-Sep-17-15', 'HRZ0060408-Sep-18-15', 'HRZ0060408-Sep-4-15', 'HRZ0060408-Sep-9-15', 'HRZ0060408-c-Sep-3-15', 'HRZ0060503-Aug-20-15', 'HRZ0060503-Aug-21-15', 'HRZ0060503-Aug-26-15', 'HRZ0060503-Aug-28-15', 'HRZ0060503-Aug-31-15', 'HRZ0060503-Sep-15-15', 'HRZ0060503-Sep-16-15', 'HRZ0060503-Sep-17-15', 'HRZ0060503-Sep-18-15', 'HRZ0060503-Sep-4-15', 'HRZ0060503-Sep-9-15', 'HRZ0060503-c-Sep-3-15', 'HRZ0060508-Aug-20-15', 'HRZ0060508-Aug-21-15', 'HRZ0060508-Aug-26-15', 'HRZ0060508-Aug-28-15', 'HRZ0060508-Aug-31-15', 'HRZ0060508-Sep-15-15', 'HRZ0060508-Sep-16-15', 'HRZ0060508-Sep-18-15', 'HRZ0060508-Sep-4-15', 'HRZ0060508-Sep-9-15', 'HRZ0060508-c-Sep-3-15', 'HRZ0060603-Aug-20-15', 'HRZ0060603-Aug-21-15', 'HRZ0060603-Aug-26-15', 'HRZ0060603-Aug-28-15', 'HRZ0060603-Aug-31-15', 'HRZ0060603-Sep-15-15', 'HRZ0060603-Sep-16-15', 'HRZ0060603-Sep-17-15', 'HRZ0060603-Sep-18-15', 'HRZ0060603-Sep-4-15', 'HRZ0060603-Sep-9-15', 'HRZ0060603-c-Sep-3-15', 'HRZ0060608-Aug-20-15', 'HRZ0060608-Aug-21-15', 'HRZ0060608-Aug-26-15', 'HRZ0060608-Aug-28-15', 'HRZ0060608-Aug-31-15', 'HRZ0060608-Sep-15-15', 'HRZ0060608-Sep-16-15', 'HRZ0060608-Sep-17-15', 'HRZ0060608-Sep-18-15', 'HRZ0060608-Sep-4-15', 'HRZ0060608-Sep-9-15', 'HRZ0060608-c-Sep-3-15', 'HRZ0060703-Aug-20-15', 'HRZ0060703-Aug-21-15', 'HRZ0060703-Aug-26-15', 'HRZ0060703-Aug-28-15', 'HRZ0060703-Aug-31-15', 'HRZ0060703-Sep-15-15', 'HRZ0060703-Sep-16-15', 'HRZ0060703-Sep-17-15', 'HRZ0060703-Sep-18-15', 'HRZ0060703-Sep-4-15', 'HRZ0060703-Sep-9-15', 'HRZ0060703-c-Sep-3-15', 'HRZ0060708-Aug-20-15', 'HRZ0060708-Aug-21-15', 'HRZ0060708-Aug-26-15', 'HRZ0060708-Aug-28-15', 'HRZ0060708-Aug-31-15', 'HRZ0060708-Sep-15-15', 'HRZ0060708-Sep-16-15', 'HRZ0060708-Sep-17-15', 'HRZ0060708-Sep-18-15', 'HRZ0060708-Sep-4-15', 'HRZ0060708-Sep-9-15', 'HRZ0060803-Aug-20-15', 'HRZ0060803-Aug-21-15', 'HRZ0060803-Aug-26-15', 'HRZ0060803-Aug-28-15', 'HRZ0060803-Aug-31-15', 'HRZ0060803-Sep-15-15', 'HRZ0060803-Sep-16-15', 'HRZ0060803-Sep-17-15', 'HRZ0060803-Sep-18-15', 'HRZ0060803-Sep-4-15', 'HRZ0060803-Sep-9-15', 'HRZ0060803-c-Sep-3-15', 'HRZ0060808-Aug-20-15', 'HRZ0060808-Aug-21-15', 'HRZ0060808-Aug-26-15', 'HRZ0060808-Aug-28-15', 'HRZ0060808-Aug-31-15', 'HRZ0060808-Sep-15-15', 'HRZ0060808-Sep-16-15', 'HRZ0060808-Sep-17-15', 'HRZ0060808-Sep-18-15', 'HRZ0060808-Sep-4-15', 'HRZ0060808-Sep-9-15', 'HRZ0060808-c-Sep-3-15', 'HRZ0070203-Aug-20-15', 'HRZ0070203-Aug-21-15', 'HRZ0070203-Aug-26-15', 'HRZ0070203-Aug-28-15', 'HRZ0070203-Aug-31-15', 'HRZ0070203-Sep-15-15', 'HRZ0070203-Sep-16-15', 'HRZ0070203-Sep-17-15', 'HRZ0070203-Sep-18-15', 'HRZ0070203-Sep-4-15', 'HRZ0070203-Sep-9-15', 'HRZ0070203-c-Sep-3-15', 'HRZ0070208-Aug-20-15', 'HRZ0070208-Aug-21-15', 'HRZ0070208-Aug-26-15', 'HRZ0070208-Aug-28-15', 'HRZ0070208-Aug-31-15', 'HRZ0070208-Sep-15-15', 'HRZ0070208-Sep-16-15', 'HRZ0070208-Sep-17-15', 'HRZ0070208-Sep-18-15', 'HRZ0070208-Sep-4-15', 'HRZ0070208-Sep-9-15', 'HRZ0070208-c-Sep-3-15', 'HRZ0070303-Aug-20-15', 'HRZ0070303-Aug-21-15', 'HRZ0070303-Aug-26-15', 'HRZ0070303-Aug-28-15', 'HRZ0070303-Aug-31-15', 'HRZ0070303-Sep-15-15', 'HRZ0070303-Sep-16-15', 'HRZ0070303-Sep-17-15', 'HRZ0070303-Sep-18-15', 'HRZ0070303-Sep-4-15', 'HRZ0070303-Sep-9-15', 'HRZ0070303-c-Sep-3-15', 'HRZ0070308-Aug-20-15', 'HRZ0070308-Aug-21-15', 'HRZ0070308-Aug-26-15', 'HRZ0070308-Aug-28-15', 'HRZ0070308-Aug-31-15', 'HRZ0070308-Sep-15-15', 'HRZ0070308-Sep-16-15', 'HRZ0070308-Sep-17-15', 'HRZ0070308-Sep-18-15', 'HRZ0070308-Sep-4-15', 'HRZ0070308-Sep-9-15', 'HRZ0070308-c-Sep-3-15', 'HRZ0070403-Aug-20-15', 'HRZ0070403-Aug-21-15', 'HRZ0070403-Aug-26-15', 'HRZ0070403-Aug-28-15', 'HRZ0070403-Aug-31-15', 'HRZ0070403-Sep-15-15', 'HRZ0070403-Sep-16-15', 'HRZ0070403-Sep-17-15', 'HRZ0070403-Sep-18-15', 'HRZ0070403-Sep-4-15', 'HRZ0070403-Sep-9-15', 'HRZ0070403-c-Sep-3-15', 'HRZ0070408-Aug-20-15', 'HRZ0070408-Aug-21-15', 'HRZ0070408-Aug-26-15', 'HRZ0070408-Aug-28-15', 'HRZ0070408-Aug-31-15', 'HRZ0070408-Sep-15-15', 'HRZ0070408-Sep-16-15', 'HRZ0070408-Sep-17-15', 'HRZ0070408-Sep-18-15', 'HRZ0070408-Sep-4-15', 'HRZ0070408-Sep-9-15', 'HRZ0070408-c-Sep-3-15', 'HRZ0070503-Aug-20-15', 'HRZ0070503-Aug-21-15', 'HRZ0070503-Aug-26-15', 'HRZ0070503-Aug-28-15', 'HRZ0070503-Aug-31-15', 'HRZ0070503-Sep-15-15', 'HRZ0070503-Sep-16-15', 'HRZ0070503-Sep-17-15', 'HRZ0070503-Sep-18-15', 'HRZ0070503-Sep-4-15', 'HRZ0070503-Sep-9-15', 'HRZ0070503-c-Sep-3-15', 'HRZ0070508-Aug-20-15', 'HRZ0070508-Aug-21-15', 'HRZ0070508-Aug-26-15', 'HRZ0070508-Aug-28-15', 'HRZ0070508-Aug-31-15', 'HRZ0070508-Sep-15-15', 'HRZ0070508-Sep-16-15', 'HRZ0070508-Sep-17-15', 'HRZ0070508-Sep-18-15', 'HRZ0070508-Sep-4-15', 'HRZ0070508-Sep-9-15', 'HRZ0070508-c-Sep-3-15', 'HRZ0070603-Aug-20-15', 'HRZ0070603-Aug-21-15', 'HRZ0070603-Aug-26-15', 'HRZ0070603-Aug-28-15', 'HRZ0070603-Aug-31-15', 'HRZ0070603-Sep-15-15', 'HRZ0070603-Sep-16-15', 'HRZ0070603-Sep-17-15', 'HRZ0070603-Sep-18-15', 'HRZ0070603-Sep-4-15', 'HRZ0070603-Sep-9-15', 'HRZ0070603-c-Sep-3-15', 'HRZ0070608-Aug-20-15', 'HRZ0070608-Aug-21-15', 'HRZ0070608-Aug-26-15', 'HRZ0070608-Aug-28-15', 'HRZ0070608-Aug-31-15', 'HRZ0070608-Sep-15-15', 'HRZ0070608-Sep-16-15', 'HRZ0070608-Sep-17-15', 'HRZ0070608-Sep-18-15', 'HRZ0070608-Sep-4-15', 'HRZ0070608-Sep-9-15', 'HRZ0070608-c-Sep-3-15', 'HRZ0070703-Aug-20-15', 'HRZ0070703-Aug-21-15', 'HRZ0070703-Aug-26-15', 'HRZ0070703-Aug-28-15', 'HRZ0070703-Aug-31-15', 'HRZ0070703-Sep-15-15', 'HRZ0070703-Sep-16-15', 'HRZ0070703-Sep-17-15', 'HRZ0070703-Sep-18-15', 'HRZ0070703-Sep-4-15', 'HRZ0070703-Sep-9-15', 'HRZ0070703-c-Sep-3-15', 'HRZ0070708-Aug-20-15', 'HRZ0070708-Aug-21-15', 'HRZ0070708-Aug-26-15', 'HRZ0070708-Aug-28-15', 'HRZ0070708-Aug-31-15', 'HRZ0070708-Sep-15-15', 'HRZ0070708-Sep-16-15', 'HRZ0070708-Sep-17-15', 'HRZ0070708-Sep-18-15', 'HRZ0070708-Sep-4-15', 'HRZ0070708-Sep-9-15', 'HRZ0070708-c-Sep-3-15', 'HRZ0070803-Aug-20-15', 'HRZ0070803-Aug-21-15', 'HRZ0070803-Aug-26-15', 'HRZ0070803-Aug-28-15', 'HRZ0070803-Aug-31-15', 'HRZ0070803-Sep-15-15', 'HRZ0070803-Sep-16-15', 'HRZ0070803-Sep-17-15', 'HRZ0070803-Sep-18-15', 'HRZ0070803-Sep-4-15', 'HRZ0070803-Sep-9-15', 'HRZ0070803-c-Sep-3-15', 'HRZ0070808-Aug-20-15', 'HRZ0070808-Aug-21-15', 'HRZ0070808-Aug-26-15', 'HRZ0070808-Aug-28-15', 'HRZ0070808-Aug-31-15', 'HRZ0070808-Sep-15-15', 'HRZ0070808-Sep-16-15', 'HRZ0070808-Sep-17-15', 'HRZ0070808-Sep-18-15', 'HRZ0070808-Sep-4-15', 'HRZ0070808-Sep-9-15', 'HRZ0070808-c-Sep-3-15', 'HRZ0080203-Aug-20-15', 'HRZ0080203-Aug-21-15', 'HRZ0080203-Aug-26-15', 'HRZ0080203-Aug-28-15', 'HRZ0080203-Aug-31-15', 'HRZ0080203-Sep-15-15', 'HRZ0080203-Sep-16-15', 'HRZ0080203-Sep-17-15', 'HRZ0080203-Sep-18-15', 'HRZ0080203-Sep-4-15', 'HRZ0080203-Sep-9-15', 'HRZ0080203-c-Sep-3-15', 'HRZ0080208-Aug-20-15', 'HRZ0080208-Aug-21-15', 'HRZ0080208-Aug-26-15', 'HRZ0080208-Aug-28-15', 'HRZ0080208-Aug-31-15', 'HRZ0080208-Sep-15-15', 'HRZ0080208-Sep-16-15', 'HRZ0080208-Sep-17-15', 'HRZ0080208-Sep-18-15', 'HRZ0080208-Sep-4-15', 'HRZ0080208-Sep-9-15', 'HRZ0080208-c-Sep-3-15', 'HRZ0080303-Aug-20-15', 'HRZ0080303-Aug-21-15', 'HRZ0080303-Aug-26-15', 'HRZ0080303-Aug-28-15', 'HRZ0080303-Aug-31-15', 'HRZ0080303-Sep-15-15', 'HRZ0080303-Sep-16-15', 'HRZ0080303-Sep-17-15', 'HRZ0080303-Sep-18-15', 'HRZ0080303-Sep-4-15', 'HRZ0080303-Sep-9-15', 'HRZ0080303-c-Sep-3-15', 'HRZ0080308-Aug-20-15', 'HRZ0080308-Aug-21-15', 'HRZ0080308-Aug-26-15', 'HRZ0080308-Aug-28-15', 'HRZ0080308-Aug-31-15', 'HRZ0080308-Sep-15-15', 'HRZ0080308-Sep-16-15', 'HRZ0080308-Sep-17-15', 'HRZ0080308-Sep-18-15', 'HRZ0080308-Sep-4-15', 'HRZ0080308-Sep-9-15', 'HRZ0080308-c-Sep-3-15', 'HRZ0080403-Aug-20-15', 'HRZ0080403-Aug-21-15', 'HRZ0080403-Aug-26-15', 'HRZ0080403-Aug-28-15', 'HRZ0080403-Aug-31-15', 'HRZ0080403-Sep-15-15', 'HRZ0080403-Sep-16-15', 'HRZ0080403-Sep-17-15', 'HRZ0080403-Sep-18-15', 'HRZ0080403-Sep-4-15', 'HRZ0080403-Sep-9-15', 'HRZ0080403-c-Sep-3-15', 'HRZ0080408-Aug-20-15', 'HRZ0080408-Aug-21-15', 'HRZ0080408-Aug-26-15', 'HRZ0080408-Aug-28-15', 'HRZ0080408-Aug-31-15', 'HRZ0080408-Sep-15-15', 'HRZ0080408-Sep-16-15', 'HRZ0080408-Sep-17-15', 'HRZ0080408-Sep-18-15', 'HRZ0080408-Sep-4-15', 'HRZ0080408-Sep-9-15', 'HRZ0080408-c-Sep-3-15', 'HRZ0080503-Aug-20-15', 'HRZ0080503-Aug-21-15', 'HRZ0080503-Aug-26-15', 'HRZ0080503-Aug-28-15', 'HRZ0080503-Aug-31-15', 'HRZ0080503-Sep-15-15', 'HRZ0080503-Sep-16-15', 'HRZ0080503-Sep-17-15', 'HRZ0080503-Sep-18-15', 'HRZ0080503-Sep-4-15', 'HRZ0080503-Sep-9-15', 'HRZ0080503-c-Sep-3-15', 'HRZ0080508-Aug-20-15', 'HRZ0080508-Aug-21-15', 'HRZ0080508-Aug-26-15', 'HRZ0080508-Aug-28-15', 'HRZ0080508-Aug-31-15', 'HRZ0080508-Sep-15-15', 'HRZ0080508-Sep-16-15', 'HRZ0080508-Sep-17-15', 'HRZ0080508-Sep-18-15', 'HRZ0080508-Sep-4-15', 'HRZ0080508-Sep-9-15', 'HRZ0080508-c-Sep-3-15', 'HRZ0080603-Aug-20-15', 'HRZ0080603-Aug-21-15', 'HRZ0080603-Aug-26-15', 'HRZ0080603-Aug-28-15', 'HRZ0080603-Aug-31-15', 'HRZ0080603-Sep-15-15', 'HRZ0080603-Sep-16-15', 'HRZ0080603-Sep-17-15', 'HRZ0080603-Sep-18-15', 'HRZ0080603-Sep-4-15', 'HRZ0080603-Sep-9-15', 'HRZ0080603-c-Sep-3-15', 'HRZ0080608-Aug-20-15', 'HRZ0080608-Aug-21-15', 'HRZ0080608-Aug-26-15', 'HRZ0080608-Aug-28-15', 'HRZ0080608-Aug-31-15', 'HRZ0080608-Sep-15-15', 'HRZ0080608-Sep-16-15', 'HRZ0080608-Sep-17-15', 'HRZ0080608-Sep-18-15', 'HRZ0080608-Sep-4-15', 'HRZ0080608-Sep-9-15', 'HRZ0080608-c-Sep-3-15', 'HRZ0080703-Aug-20-15', 'HRZ0080703-Aug-21-15', 'HRZ0080703-Aug-26-15', 'HRZ0080703-Aug-28-15', 'HRZ0080703-Aug-31-15', 'HRZ0080703-Sep-15-15', 'HRZ0080703-Sep-16-15', 'HRZ0080703-Sep-17-15', 'HRZ0080703-Sep-18-15', 'HRZ0080703-Sep-4-15', 'HRZ0080703-Sep-9-15', 'HRZ0080703-c-Sep-3-15', 'HRZ0080708-Aug-20-15', 'HRZ0080708-Aug-21-15', 'HRZ0080708-Aug-26-15', 'HRZ0080708-Aug-28-15', 'HRZ0080708-Aug-31-15', 'HRZ0080708-Sep-15-15', 'HRZ0080708-Sep-16-15', 'HRZ0080708-Sep-17-15', 'HRZ0080708-Sep-18-15', 'HRZ0080708-Sep-4-15', 'HRZ0080708-Sep-9-15', 'HRZ0080708-c-Sep-3-15', 'HRZ0080803-Aug-20-15', 'HRZ0080803-Aug-21-15', 'HRZ0080803-Aug-26-15', 'HRZ0080803-Aug-28-15', 'HRZ0080803-Aug-31-15', 'HRZ0080803-Sep-15-15', 'HRZ0080803-Sep-16-15', 'HRZ0080803-Sep-17-15', 'HRZ0080803-Sep-18-15', 'HRZ0080803-Sep-4-15', 'HRZ0080803-Sep-9-15', 'HRZ0080803-c-Sep-3-15', 'HRZ0080808-Aug-20-15', 'HRZ0080808-Aug-21-15', 'HRZ0080808-Aug-26-15', 'HRZ0080808-Aug-28-15', 'HRZ0080808-Aug-31-15', 'HRZ0080808-Sep-15-15', 'HRZ0080808-Sep-16-15', 'HRZ0080808-Sep-17-15', 'HRZ0080808-Sep-18-15', 'HRZ0080808-Sep-4-15', 'HRZ0080808-Sep-9-15', 'HRZ0080808-c-Sep-3-15', 'HW08-06-83', 'IG50-21-31', 'IM90-62-42', 'IY97-58-23', 'JC-01-A', 'JC-01-B', 'JC-02-A', 'JC-02-B', 'JC-03-A', 'JC-03-B', 'JC-04-A', 'JC-04-B', 'JC-05', 'JC-06', 'JC-07', 'KG83-89-57', 'KV58-98-42', 'KX01-05-88', 'KX80-58-26', 'LD11-86-62', 'LJ72-06-68', 'LL20-60-86', 'LQ16-67-52', 'MA22-22-20', 'ME79-73-03', 'MF13-03-39', 'MI41-07-98', 'MP07-41-28', 'MP60-53-24', 'MW02-30-99', 'NA12878-01', 'NA12878-02', 'NA12879-01', 'NA12879-02', 'NA12882-01', 'NA12882-02', 'NA12890-01', 'NA12890-02', 'NE01-89-50', 'NHV-Q4-1', 'NHV-Q4-2', 'NHV-Q4-3', 'NHV-Q5-1', 'NHV-Q5-2', 'NHV-Q5-3', 'NHV-Q6-1', 'NHV-Q6-2', 'NHV-Q6-3', 'NI77-14-46', 'NIST', 'NJ39-19-29', 'NK96-09-10', 'NO56-89-30', 'NO95-83-22', 'NQ02-54-12', 'NQ80-95-73', 'OD79-34-69', 'OI11-03-15', 'OK43-50-43', 'OL19-92-31', 'OR60-37-19', 'OY30-67-72', 'PG00-90-14', 'PI92-98-79', 'PQ27-24-18', 'PQ56-06-86', 'PW97-59-48', 'QB93-89-00', 'QF20-58-40', 'RC76-05-11', 'RD31-53-29', 'RG69-02-63', 'RQ00-34-92', 'RT53-40-83', 'RX22-37-29', 'SF29-03-65', 'SG45-36-99', 'SS58-50-74', 'ST98-63-50', 'SU71-58-99', 'SX86-07-29', 'Streck0002-Sep-15-15', 'Streck0002-Sep-16-15', 'Streck0002-Sep-17-15', 'Streck0002-Sep-4-15', 'Streck0002-Sep-9-15', 'Streck0002-c-Sep-3-15', 'TD92-84-54', 'TG79-52-42', 'TN63-88-05', 'TY67-93-88', 'UI96-96-96', 'UJ43-08-54', 'UP11-02-86', 'US01-19-76', 'UW82-31-47', 'VB54-31-04', 'VB61-00-15', 'VG37-78-73', 'VJ95-82-66', 'VK18-09-72', 'VL73-74-59', 'VR89-80-02', 'VR99-08-16', 'VY36-96-32', 'WO44-13-06', 'WO64-26-85', 'WS04-26-25', 'WU16-76-81', 'WZ89-91-33', 'XE11-41-53', 'XI29-64-88', 'XK83-48-90', 'XQ71-96-42', 'XT12-13-13', 'XU28-26-81', 'XY76-78-25', 'YB79-06-28', 'YF53-87-14', 'YG15-25-68', 'YK13-41-23', 'YL80-02-83', 'YM64-86-39', 'YP06-22-79', 'YP77-91-57', 'YQ46-38-01', 'ZE80-53-92', 'ZG94-43-02', 'ZI89-88-24', 'ZK73-98-08', 'ZS29-63-16']
nans_exps = all_SNP[all_SNP.index.isin(afreq_nans)].EXPERIMENT_NAME.unique()
nans_exps
array(['BC150616-Analytical-2Hawk', 'CC150608-Pool2',
'CM150603-Analytical-Chip-pool1', 'CC150630-HF-pool1',
'KT150701a-pool2-Hawk', 'KT150701a-pool1-BigBird',
'KT150701b-pool3', 'CM150701-Analytical-Chip-pool1',
'KT150701b-pool2', 'BC150623-Analytical-2Falcon',
'BC150603-Analytical-1BigBird', 'KT150716a-pool1-BB', 'Pazitpool1',
'KT150716a-pool3-H', 'BC150803-Analytical-Chip28-3BigBird',
'BC150803-Analytical-Chip29-1Falcon', 'KT150701b-pool1-BB',
'Pazitpool3', 'BC150803-Analytical-Chip29-2Hawk',
'BC150803-Analytical-Chip29-3Osprey',
'BC150803-Analytical-Chip25-3Hawk',
'BC150803-Analytical-Chip25-1BigBird',
'BC150803-Analytical-Chip25-2Falcon', 'Pazitpool2', 'CCPool3',
'CorinaTestRunPool2', 'CorinaTestRunPool3', 'CDC26AugPool2',
'CDC26AugPool3', 'CM150804-Analytical-Chip-pool1',
'CM150804-Analytical-Chip-pool2', 'CM150804-Analytical-Chip-pool5',
'CM150804-Analytical-Chip-pool4', 'CM150804-Analytical-Chip-pool3',
'PQ-CC2', 'BC150803-Analytical-Chip27-2BigBird',
'BC150803-Analytical-Chip27-1Osprey',
'BC150803-Analytical-Chip27-3Falcon', 'CorinaTestRun',
'BC150803-Analytical-Chip21-1Hawk', 'BC150812-repool-F',
'BC150803-Analytical-Chip21-2Osprey', 'CCPool2', 'CC2-Pool1',
'CDC26AugPool1', 'CM31Aug2015Pool1', 'CM31Aug2015Pool2',
'CM31Aug2015Pool3', 'CM1Sep2015Pool3', 'CM1Sep2015Pool2',
'CM1Sep2015Pool1', 'CDC2Sep2015Pool2', 'CDC2Sep2015Pool3',
'CDC8Sep2015Pool1', 'KT150831-pool1-BB', 'CDC8Sep2015Pool2',
'CDC8Sep2015Pool3', 'CDC2Sep2015Pool1', 'KT150831-pool2-F',
'KT150831-pool3-H', 'CYC11Sep2015Pool2', 'CYC11Sep2015Pool1',
'BC150902-Chip30-16DOAR', 'BC150902-Chip30-ContamSmpls-Trovagene',
'PS16SEP2015P3', 'PS16SEP2015P1', 'PS16SEP2015P2',
'BC150902-Chip32-1BigBird', 'BC150902-Chip32-2BigBird',
'CYC11Sep2015Pool3', 'PS02SEP2015P3', 'CYC04Sep2015Pool3',
'CYC04Sep2015Pool2', 'PS02SEP2015P2', 'CYC04Sep2015Pool1',
'JC150915-Pool1', 'PS02SEP2015P1', 'StanfordPedsChip3-pool3',
'JC150915-Pool3', 'StanfordPedsChip1-pool3',
'StanfordPedsChip5-pool3', 'StanfordPedsChip7-pool3',
'StanfordPedsChip4-pool3', 'StanfordPedsChip2-pool3',
'StanfordPedsChipRedo-pool2', 'KT151022-Chip3-2-Osprey',
'KT151022-Chip3-3-BigBird', 'Experiment1_Pool3_8.4pM_Input'], dtype=object)
sorted(df_allSmpl.ix[df_allSmpl.EXPERIMENT.isin(nans_exps)].RUN_NAME.unique())
['150605_M02587_0102_000000000-AE6CC', '150608_M02587_0103_000000000-AG0HK', '150619_M03241_0070_000000000-AGBAN', '150619_M03828_0011_000000000-AGB7D', '150629_M03206_0073_000000000-AGBCB', '150703_M03206_0075_000000000-AH332', '150707_M02587_0112_000000000-AH6B2', '150707_M03241_0075_000000000-AH2MR', '150709_M03241_0077_000000000-AGBAT', '150716_M03206_0081_000000000-AH2B9', '150716_M03241_0081_000000000-AH62D', '150721_M02587_0116_AHDT6', '150724_M02587_0117_000000000-AHF44', '150724_M03241_0083_000000000-AHCJ4', '150805_M02587_0119_AHGHJ', '150805_M03206_0085_AHJCK', '150805_M03241_0086_AHG81', '150805_M03828_0025_AHGRJ', '150806_M02587_0120_000000000-AHHK1', '150806_M02587_0120_AHHK1', '150806_M03206_0086_AHJV0', '150806_M03241_0087_AHHK0', '150806_M03828_0026_AHGHP', '150810_M02587_0121_AHGAG', '150810_M03206_0087_AHCCA', '150810_M03241_0088_AHG0D', '150810_M03828_0027_AHGMB', '150813_M02587_0122_AHUHY', '150813_M03206_0088_AHUC8', '150813_M03828_0028_AHHK3', '150817_M02587_0123_AHU85', '150817_M03241_0091_AHUNL', '150817_M03828_0030_AHU9E', '150818_M03206_0090_AHUA2', '150820_M03206_0091_AHJPM', '150820_M03241_0092_AHHJG', '150820_M03828_0031_AHJT1', '150821_M03206_0092_AHFYH', '150821_M03241_0093_AJ818', '150821_M03828_0032_AJ8KM', '150826_M02587_0124_AJ93R', '150826_M03206_0093_AJ8KB', '150826_M03828_0033_AJ2NT', '150828_M03206_0094_AHHMG', '150828_M03241_0094_AHJVV', '150828_M03828_0034_AHJRR', '150831_M03206_0095_AHJUY', '150831_M03828_0035_AHHJH', '150901_M03828_0036_AHJRM', '150903_M02587_0125_AHFNL', '150903_M03206_0096_AHHM6', '150903_M03828_0037_AHGJ5', '150904_M02587_0126_AJ4R0', '150904_M03206_0097_AJ4RN', '150904_M03241_0095_AJ513', '150909_M03206_0098_AJ524', '150909_M03241_0096_AJ6DL', '150909_M03828_0038_AJ4PH', '150910_M02587_0127_AJ933', '150910_M03206_0099_AJ3MD', '150910_M03241_0097_AJ96F', '150910_M03828_0039_AJ3PT', '150911_M03828_0040-AJ8JH_09-14-2015-12h50m', '150915_M02587_0129_AJ8LE', '150915_M03206_0100_AJGB3', '150915_M03241_0098_AJ4WN', '150915_M03828_0041_AJ4R8', '150916_M02587_0130_AGGYA', '150916_M03206_0101_AJ517', '150916_M03241_0099_AJ4WA', '150916_M03828_0042_AJ4RL', '150917_M03206_0102_AJ50Y', '150917_M03241_0100_AJ68Y', '150917_M03828_0043_AJ4W7', '150918_M02587_0131_AJ80U', '150918_M03206_0103_AJ4R4', '150918_M03241_0101_AJ5KG', '150918_M03828_0044_AJ4W3', '150922_M03241_0102_AJ4B0', '150925_M03241_0104_AJ96T', '150926_M03241_0105_AJ6D2', '150928_M03828_0049_AHHT2', '151002_M02587_0138_AHEGR', '151005_M03241_0111_AHCJD', '151006_M02587_0140_AHEGT', '151012_M03241_0117_AJVUE', '151102_M02587_0157_AJWBY', '151102_M03828_0068_AJWPC', '160108_M03241_0150_ALGA8']
t_init = timeit.default_timer()
all_SNP = pd.read_csv(seq01_SNP, sep='$')#, verbose=True)
all_SNP.info()
all_SNP.set_index('SAMPLE_NAME', inplace=True)
print_exec_time(t_init)
<class 'pandas.core.frame.DataFrame'> RangeIndex: 3388573 entries, 0 to 3388572 Data columns (total 36 columns): ID float64 RUN_ID float64 EXPERIMENT_NAME object SAMPLE_NAME object AMPLICON_NAME object SNP_NAME object CHROMOSOME object POSITION float64 REF object ALT object REF_COUNT float64 ALT_COUNT float64 REF_FREQ float64 ALT_FREQ float64 REF_ALT_READS float64 ALL_READS float64 ERR_COUNT float64 ERR_FREQ_TOTAL float64 CHROMOSOME_MOCK object POSITION_MOCK float64 DONORFREQUENCY float64 ALT_FREQ_TOTAL float64 REF_FREQ_TOTAL float64 DONORFREQUENCYTOTAL float64 RECIPIENTALLELE object DONORALLELE object SUBSTITUTION object SNPDIRECTION object SAMPLE_PROJECT float64 UNIQUEID object RELATIVE_COVERAGE float64 REFALTFRACTION float64 SNPPASSQC bool BACKGROUND float64 ADJUSTEDFREQUENCY float64 RECIPIENTGENOCALL object dtypes: bool(1), float64(21), object(14) memory usage: 908.1+ MB Execution time: 24998.14492 ms
t_init = timeit.default_timer()
df_allSmpl = pd.read_csv(seq01_smpl, verbose=True, sep='$')#error_bad_lines=False)
df_allSmpl.sort_index(inplace=True, axis=1)
df_allSmpl.set_index('SAMPLE_NAME', inplace=True)
df_allSmpl = convert_result_to_float(df_allSmpl,'PCT_DD_CFDNA', div=100)
# df_allSmpl = convert_result_to_float(df_allSmpl, 'TOTAL_READS')
df_allSmpl.info(verbose=True)
print_exec_time(t_init)
Tokenization took: 42.89 ms Type conversion took: 100.52 ms Parser memory cleanup took: 0.03 ms Tokenization took: 23.84 ms Type conversion took: 54.58 ms Parser memory cleanup took: 0.01 ms <class 'pandas.core.frame.DataFrame'> Index: 16212 entries, HRZ-7-7-8ng-16054E4-400E4 to SL303-Oct-28-15 Data columns (total 103 columns): AA_BARCODE_NAME object AA_BARCODE_WELL object AA_INDEX object ACCEPTED_BY object ACCEPTED_DATE object ACCESSIONED_BY object ACCESSION_NO object ACCESSION_SESSION_ID object ACCESS_ARRAY_NUM float64 ANALYSIS_NUM object BC_SESSION_ID float64 BLOOD_VOL float64 CFDNA_PROCESSED object CFDNA_PROCESS_DATE float64 CLUSTER_DENSITY float64 COLLECTION_DATE object COLLECTION_TIME object COMMENTS object DATE_ACCESSIONED object DATE_SEQUENCED object DAYS_SINCE_COLLECTION object DD_CFDNA_PASS_QC_N_DETECT_RPT object DESCRIPTION float64 DONOR_DNA_SOURCE object DONOR_RELATIONSHIP_DESCRIPTION object DONOR_TYPE object EXPERIMENT object EXP_DATE object FRACDETECTABLE object ID float64 INVESTIGATOR object LAB object LIBRARY_ID float64 LIVING_RELATED object LIVING_RELATED_DESC object MANIFEST_BARCODE_LABEL object MASS_INPUT object ORGAN object PATIENT object PATIENT_STUDY_ID object PAXGENE_WEIGHT float64 PCT_DD_CFDNA float64 PCT_DD_CFDNA_PASS_QC object PCT_DD_CFDNA_PASS_QC_N_DETECT object PCT_SPIKE_DPCR float64 PF object PLASMA_INPUT_VOL float64 POOL_ID float64 PRE_AMP_NUM float64 PROCESS_DATE object PROJECT_NAME object QC_BACKGROUND object QC_BACKGROUND_VAL object QC_CONTAM object QC_CONTAM_NON_ZR_RECHOMO_SNPS object QC_DD_HIGH object QC_DD_HIGH_PERCENT_RECIPHET object QC_LOW_INPUT object QC_LOW_INPUT_2 object QC_LOW_INPUT_2_PCT_RECIPHET object QC_LOW_INPUT_COVVAR_VALUE object QC_RESULT object QC_SUFFICIENT_SNPS object QC_SUFFICIENT_SNPS_RECHOMO_NUM object RD_SAMPLE_TYPE object READS_PASS_QC float64 RECIPIENTHETDIVISION object RECIPIENT_DNA_SOURCE object REPORTABLE object RND_PROJECT_NAME object RUN_DATE object RUN_ID object RUN_NAME object RUN_QC object SAMPLENAME object SAMPLE_ID object SAMPLE_STATUS object SAMPLE_WELL object SEQUENCER object SNPS_PASS_QC float64 SNPS_PASS_QC_PCT object SNPS_RECIPHET object SNPS_RECIPHET_PCT object SNPS_TRIALLELIC object SNPS_TRIALLELIC_PCT object SNPS_WITH_INSUFFICIENT_READS object SNPS_W_INSUFFICIENT_READS_PCT object STATUS object STOCK_DNA_CONC float64 STREK_LOT_NUM object STUDY_NAME object TARGETED_PCT_SPIKE float64 TEST_NAME object TOTAL_READS float64 TTP_FILE object TTP_FILE_NUM object TUBE_COMMENTS object TUBE_EID object TUBE_EID_SEQ float64 TUBE_SIZE object TUBE_TYPE object TUBE_TYPE_NAME object VISIT_ID float64 dtypes: float64(21), object(82) memory usage: 12.9+ MB Execution time: 327.34276 ms
/Users/jcollins-macbook/anaconda3/lib/python3.6/site-packages/IPython/core/interactiveshell.py:2717: DtypeWarning: Columns (6,7,9,16,36,38,47,51,55,61,64,66,76,79,100,102) have mixed types. Specify dtype option on import or set low_memory=False.
# all_SNP.corr().to_csv('all_SNP_pandas_correlation_matrix.csv')
df_all_AV = pd.read_clipboard()
df_all_AV.info()
<class 'pandas.core.frame.DataFrame'> Int64Index: 180 entries, 645 to 305 Data columns (total 12 columns): Sample_Name 180 non-null object Sample_Name_short 180 non-null object AA_Chip_Number 180 non-null int64 HRZ_Panel 93 non-null float64 Input_ng 93 non-null float64 dd_cfDNA 180 non-null float64 dd_cfDNA_Pass_QC 180 non-null float64 QC_Result 180 non-null object fracDetectable 180 non-null float64 Is_Streck 180 non-null bool mean 1 non-null object median 1 non-null object dtypes: bool(1), float64(5), int64(1), object(5) memory usage: 17.1+ KB
df_all = df_allSmpl[df_allSmpl.index.isin(AV_all_smpls_list)]
df_all.info()
<class 'pandas.core.frame.DataFrame'> Index: 1927 entries, AJ61-75-92-Nov-4-15 to SL303-Oct-28-15 Columns: 103 entries, AA_BARCODE_NAME to VISIT_ID dtypes: float64(21), object(82) memory usage: 1.5+ MB
df_all_AV_blanks = df_all.copy()
df_all = df_allSmpl[df_allSmpl.STUDY_NAME=='DART']
df_all.info()
<class 'pandas.core.frame.DataFrame'> Index: 2059 entries, AH98-39-97a-2-89688 to ZE31-84-54a-2-89669 Columns: 103 entries, AA_BARCODE_NAME to VISIT_ID dtypes: float64(21), object(82) memory usage: 1.6+ MB
# df_all_KT = df_allSmpl[df_allSmpl.index.str.startswith('KT170203')]
# df_all_KT = pd.read_csv(KT_smpl, sep='\t')
# df_all_KT.info()
# df_allSmpl.QC_RESULT
series_all_DART = pd.read_csv(DART_lock2_smpls)
series_all_DART.info()
all_DART_list = series_all_DART.Sample_Name.values
### DART FILTER
# df_all_DART = df_allSmpl[df_allSmpl.index.str.startswith(tuple(series_all_DART.Sample_Name.values))]
df_all_DART = df_allSmpl[(df_allSmpl['TUBE_EID'].isin(all_DART_list))
& (df_allSmpl.QC_RESULT)]
<class 'pandas.core.frame.DataFrame'> RangeIndex: 1470 entries, 0 to 1469 Data columns (total 1 columns): Sample_Name 1470 non-null object dtypes: object(1) memory usage: 11.6+ KB
df_bySNP = all_SNP[all_SNP.index.isin(df_all.index)]# & (all_SNP.SNPPASSQC)]
df_bySNP.info(verbose=True)
<class 'pandas.core.frame.DataFrame'> Index: 493905 entries, HRZ-7-6-60-Oct-1-15 to NG63-03-05b-2-40184 Data columns (total 35 columns): ID 493905 non-null float64 RUN_ID 493905 non-null float64 EXPERIMENT_NAME 493905 non-null object AMPLICON_NAME 493905 non-null object SNP_NAME 493905 non-null object CHROMOSOME 493905 non-null object POSITION 493905 non-null float64 REF 493905 non-null object ALT 493905 non-null object REF_COUNT 493905 non-null float64 ALT_COUNT 493905 non-null float64 REF_FREQ 493905 non-null float64 ALT_FREQ 493905 non-null float64 REF_ALT_READS 493905 non-null float64 ALL_READS 493905 non-null float64 ERR_COUNT 493905 non-null float64 ERR_FREQ_TOTAL 493905 non-null float64 CHROMOSOME_MOCK 493905 non-null object POSITION_MOCK 493905 non-null float64 DONORFREQUENCY 493905 non-null float64 ALT_FREQ_TOTAL 493905 non-null float64 REF_FREQ_TOTAL 493905 non-null float64 DONORFREQUENCYTOTAL 493905 non-null float64 RECIPIENTALLELE 493905 non-null object DONORALLELE 493905 non-null object SUBSTITUTION 493905 non-null object SNPDIRECTION 493905 non-null object SAMPLE_PROJECT 0 non-null float64 UNIQUEID 493905 non-null object RELATIVE_COVERAGE 493905 non-null float64 REFALTFRACTION 493905 non-null float64 SNPPASSQC 493905 non-null bool BACKGROUND 329306 non-null float64 ADJUSTEDFREQUENCY 329306 non-null float64 RECIPIENTGENOCALL 445042 non-null object dtypes: bool(1), float64(21), object(13) memory usage: 132.4+ MB
nans = nan_adjFreq_snps.iloc[:,0].values
nans
array(['AVBlank-Aug-21-15', 'AVBlank-Aug-26-15', 'AVBlank-Aug-28-15',
'AVBlank-Aug-31-15', 'AVBlank-Sep-15-15', 'AVBlank-Sep-16-15',
'AVBlank-Sep-18-15', 'AVBlank-Sep-4-15', 'AVBlank-Sep-9-15',
'AVStreck0001-Aug-20-15', 'AVStreck0001-Aug-21-15',
'AVStreck0001-Aug-26-15', 'AVStreck0001-Aug-28-15',
'AVStreck0001-Aug-31-15', 'AVStreck0001-Sep-18-15',
'Streck0002-Sep-15-15', 'Streck0002-Sep-16-15',
'Streck0002-Sep-4-15', 'Streck0002-Sep-9-15'], dtype=object)
# df_all.to_csv('av_blanks_sample_stats.csv')
df_bySNP
| ID | RUN_ID | EXPERIMENT_NAME | AMPLICON_NAME | SNP_NAME | CHROMOSOME | POSITION | REF | ALT | REF_COUNT | ALT_COUNT | REF_FREQ | ALT_FREQ | REF_ALT_READS | ALL_READS | ERR_COUNT | ERR_FREQ_TOTAL | CHROMOSOME_MOCK | POSITION_MOCK | DONORFREQUENCY | ALT_FREQ_TOTAL | REF_FREQ_TOTAL | DONORFREQUENCYTOTAL | RECIPIENTALLELE | DONORALLELE | SUBSTITUTION | SNPDIRECTION | SAMPLE_PROJECT | UNIQUEID | RELATIVE_COVERAGE | REFALTFRACTION | SNPPASSQC | BACKGROUND | ADJUSTEDFREQUENCY | RECIPIENTGENOCALL | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SAMPLE_NAME | |||||||||||||||||||||||||||||||||||
| HRZ-8-1-60-Oct-1-15 | 2617.0 | 195.0 | CDC30SepPool1 | aIISNP102 | IISNP102 | chr1 | 154744807.0 | C | G | 4.0 | 12710.0 | 0.000315 | 0.999685 | 12714.0 | 12714.0 | 0.0 | 0.000000 | chr1_154744236_154745348 | 572.0 | 0.000315 | 0.999685 | 0.000315 | 0.000315 | G | C | GC | IISNP102 GC | NaN | HRZ-8-1-60-Oct-1-15 | 1.505214 | 1.000000 | True | 0.000165 | 0.000150 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2618.0 | 195.0 | CDC30SepPool1 | aIISNP3 | IISNP3 | chr1 | 160786670.0 | A | G | 13694.0 | 2.0 | 0.999854 | 0.000146 | 13696.0 | 13697.0 | 1.0 | 0.000073 | chr1_160786113_160787219 | 558.0 | 0.000146 | 0.000146 | 0.999781 | 0.000146 | A | G | AG | IISNP3 AG | NaN | HRZ-8-1-60-Oct-1-15 | 1.621592 | 0.999927 | True | 0.001835 | -0.001689 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2619.0 | 195.0 | CDC30SepPool1 | aIISNP214 | IISNP214 | chr1 | 161019040.0 | G | C | 5545.0 | 5243.0 | 0.513997 | 0.486003 | 10788.0 | 10790.0 | 2.0 | 0.000185 | chr1_161018464_161019586 | 577.0 | 0.486003 | 0.485913 | 0.513902 | 0.485913 | G | C | GC | IISNP214 GC | NaN | HRZ-8-1-60-Oct-1-15 | 1.277431 | 0.999815 | True | 0.000165 | 0.485838 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2620.0 | 195.0 | CDC30SepPool1 | aIISNP242 | IISNP242 | chr1 | 179876988.0 | C | G | 6129.0 | 5884.0 | 0.510197 | 0.489803 | 12013.0 | 12014.0 | 1.0 | 0.000083 | chr1_179876419_179877532 | 570.0 | 0.489803 | 0.489762 | 0.510155 | 0.489762 | C | G | CG | IISNP242 CG | NaN | HRZ-8-1-60-Oct-1-15 | 1.422341 | 0.999917 | True | 0.000167 | 0.489636 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2621.0 | 195.0 | CDC30SepPool1 | aIISNP264 | IISNP264 | chr1 | 205554085.0 | G | C | 4941.0 | 5512.0 | 0.472687 | 0.527313 | 10453.0 | 10460.0 | 7.0 | 0.000669 | chr1_205553518_205554618 | 568.0 | 0.472687 | 0.526960 | 0.472371 | 0.472371 | C | G | CG | IISNP264 CG | NaN | HRZ-8-1-60-Oct-1-15 | 1.238362 | 0.999331 | True | 0.000167 | 0.472521 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2622.0 | 195.0 | CDC30SepPool1 | aIISNP257 | IISNP257 | chr1 | 214837110.0 | C | G | 5220.0 | 5200.0 | 0.500960 | 0.499040 | 10420.0 | 10424.0 | 4.0 | 0.000384 | chr1_214836531_214837646 | 580.0 | 0.499040 | 0.498849 | 0.500767 | 0.498849 | C | G | CG | IISNP257 CG | NaN | HRZ-8-1-60-Oct-1-15 | 1.234100 | 0.999616 | True | 0.000167 | 0.498874 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2623.0 | 195.0 | CDC30SepPool1 | aIISNP19 | IISNP19 | chr1 | 233448413.0 | C | T | 5311.0 | 3129.0 | 0.629265 | 0.370735 | 8440.0 | 8443.0 | 3.0 | 0.000355 | chr1_233447873_233448982 | 541.0 | 0.370735 | 0.370603 | 0.629042 | 0.370603 | C | T | CT | IISNP19 CT | NaN | HRZ-8-1-60-Oct-1-15 | 0.999569 | 0.999645 | True | 0.001077 | 0.369658 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2624.0 | 195.0 | CDC30SepPool1 | aIISNP238 | IISNP238 | chr1 | 234041422.0 | G | C | 6089.0 | 6559.0 | 0.481420 | 0.518580 | 12648.0 | 12651.0 | 3.0 | 0.000237 | chr1_234040863_234041981 | 560.0 | 0.481420 | 0.518457 | 0.481306 | 0.481306 | C | G | CG | IISNP238 CG | NaN | HRZ-8-1-60-Oct-1-15 | 1.497755 | 0.999763 | True | 0.000167 | 0.481253 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2625.0 | 195.0 | CDC30SepPool1 | aIISNP104 | IISNP104 | chr1 | 236381825.0 | G | C | 2500.0 | 2585.0 | 0.491642 | 0.508358 | 5085.0 | 5085.0 | 0.0 | 0.000000 | chr1_236381266_236382387 | 560.0 | 0.491642 | 0.508358 | 0.491642 | 0.491642 | C | G | CG | IISNP104 CG | NaN | HRZ-8-1-60-Oct-1-15 | 0.602015 | 1.000000 | True | 0.000167 | 0.491475 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2626.0 | 195.0 | CDC30SepPool1 | aIISNP83 | IISNP83 | chr1 | 239881926.0 | A | G | 6552.0 | 6.0 | 0.999085 | 0.000915 | 6558.0 | 6561.0 | 3.0 | 0.000457 | chr1_239881353_239882471 | 574.0 | 0.000915 | 0.000914 | 0.998628 | 0.000914 | A | G | AG | IISNP83 AG | NaN | HRZ-8-1-60-Oct-1-15 | 0.776759 | 0.999543 | True | 0.001835 | -0.000920 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2627.0 | 195.0 | CDC30SepPool1 | aIISNP131 | IISNP131 | chr1 | 247752019.0 | G | C | 4770.0 | 1.0 | 0.999790 | 0.000210 | 4771.0 | 4772.0 | 1.0 | 0.000210 | chr1_247751483_247752601 | 537.0 | 0.000210 | 0.000210 | 0.999581 | 0.000210 | G | C | GC | IISNP131 GC | NaN | HRZ-8-1-60-Oct-1-15 | 0.564958 | 0.999790 | True | 0.000165 | 0.000045 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2628.0 | 195.0 | CDC30SepPool1 | aIISNP121 | IISNP121 | chr10 | 5136651.0 | C | G | 6704.0 | 2.0 | 0.999702 | 0.000298 | 6706.0 | 6709.0 | 3.0 | 0.000447 | chr10_5136059_5137186 | 593.0 | 0.000298 | 0.000298 | 0.999255 | 0.000298 | C | G | CG | IISNP121 CG | NaN | HRZ-8-1-60-Oct-1-15 | 0.794280 | 0.999553 | True | 0.000167 | 0.000132 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2629.0 | 195.0 | CDC30SepPool1 | aIISNP244 | IISNP244 | chr10 | 21414892.0 | C | G | 10468.0 | 0.0 | 1.000000 | 0.000000 | 10468.0 | 10468.0 | 0.0 | 0.000000 | chr10_21414322_21415442 | 571.0 | 0.000000 | 0.000000 | 1.000000 | 0.000000 | C | G | CG | IISNP244 CG | NaN | HRZ-8-1-60-Oct-1-15 | 1.239309 | 1.000000 | True | 0.000167 | -0.000167 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2630.0 | 195.0 | CDC30SepPool1 | aIISNP114 | IISNP114 | chr10 | 24873369.0 | C | G | 1881.0 | 1982.0 | 0.486927 | 0.513073 | 3863.0 | 3998.0 | 135.0 | 0.033767 | chr10_24872787_24873906 | 583.0 | 0.486927 | 0.495748 | 0.470485 | 0.470485 | G | C | GC | IISNP114 GC | NaN | HRZ-8-1-60-Oct-1-15 | 0.473324 | 0.966233 | True | 0.000165 | 0.486763 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2631.0 | 195.0 | CDC30SepPool1 | aIISNP178 | IISNP178 | chr10 | 25701341.0 | C | G | 0.0 | 4584.0 | 0.000000 | 1.000000 | 4584.0 | 4586.0 | 2.0 | 0.000436 | chr10_25700758_25701869 | 584.0 | 0.000000 | 0.999564 | 0.000000 | 0.000000 | G | C | GC | IISNP178 GC | NaN | HRZ-8-1-60-Oct-1-15 | 0.542938 | 0.999564 | True | 0.000165 | -0.000165 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2632.0 | 195.0 | CDC30SepPool1 | aIISNP181 | IISNP181 | chr10 | 38344700.0 | C | G | 3414.0 | 3667.0 | 0.482135 | 0.517865 | 7081.0 | 7084.0 | 3.0 | 0.000423 | chr10_38344113_38345242 | 588.0 | 0.482135 | 0.517645 | 0.481931 | 0.481931 | G | C | GC | IISNP181 GC | NaN | HRZ-8-1-60-Oct-1-15 | 0.838677 | 0.999577 | True | 0.000165 | 0.481971 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2633.0 | 195.0 | CDC30SepPool1 | aIISNP215 | IISNP215 | chr10 | 69934258.0 | C | G | 4665.0 | 1.0 | 0.999786 | 0.000214 | 4666.0 | 4670.0 | 4.0 | 0.000857 | chr10_69933675_69934782 | 584.0 | 0.000214 | 0.000214 | 0.998929 | 0.000214 | C | G | CG | IISNP215 CG | NaN | HRZ-8-1-60-Oct-1-15 | 0.552883 | 0.999143 | True | 0.000167 | 0.000048 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2634.0 | 195.0 | CDC30SepPool1 | aIISNP165 | IISNP165 | chr10 | 90342837.0 | C | G | 10510.0 | 0.0 | 1.000000 | 0.000000 | 10510.0 | 10515.0 | 5.0 | 0.000476 | chr10_90342263_90343376 | 575.0 | 0.000000 | 0.000000 | 0.999524 | 0.000000 | C | G | CG | IISNP165 CG | NaN | HRZ-8-1-60-Oct-1-15 | 1.244874 | 0.999524 | True | 0.000167 | -0.000167 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2635.0 | 195.0 | CDC30SepPool1 | aIISNP35 | IISNP35 | chr10 | 97172595.0 | T | C | 11830.0 | 4.0 | 0.999662 | 0.000338 | 11834.0 | 11835.0 | 1.0 | 0.000084 | chr10_97172060_97173166 | 536.0 | 0.000338 | 0.000338 | 0.999578 | 0.000338 | T | C | TC | IISNP35 TC | NaN | HRZ-8-1-60-Oct-1-15 | 1.401149 | 0.999916 | True | 0.001818 | -0.001480 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2636.0 | 195.0 | CDC30SepPool1 | aIISNP154 | IISNP154 | chr10 | 99439541.0 | G | C | 13242.0 | 4.0 | 0.999698 | 0.000302 | 13246.0 | 13248.0 | 2.0 | 0.000151 | chr10_99438974_99440086 | 568.0 | 0.000302 | 0.000302 | 0.999547 | 0.000302 | G | C | GC | IISNP154 GC | NaN | HRZ-8-1-60-Oct-1-15 | 1.568434 | 0.999849 | True | 0.000165 | 0.000137 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2637.0 | 195.0 | CDC30SepPool1 | aIISNP256 | IISNP256 | chr10 | 114053546.0 | C | G | 0.0 | 4743.0 | 0.000000 | 1.000000 | 4743.0 | 4743.0 | 0.0 | 0.000000 | chr10_114052989_114054096 | 558.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | G | C | GC | IISNP256 GC | NaN | HRZ-8-1-60-Oct-1-15 | 0.561525 | 1.000000 | True | 0.000165 | -0.000165 | Recipient Homo |
| HRZ-8-1-60-Oct-1-15 | 2638.0 | 195.0 | CDC30SepPool1 | aIISNP189 | IISNP189 | chr10 | 126714714.0 | G | C | 5653.0 | 5210.0 | 0.520390 | 0.479610 | 10863.0 | 10867.0 | 4.0 | 0.000368 | chr10_126714134_126715248 | 581.0 | 0.479610 | 0.479433 | 0.520199 | 0.479433 | G | C | GC | IISNP189 GC | NaN | HRZ-8-1-60-Oct-1-15 | 1.286547 | 0.999632 | True | 0.000165 | 0.479445 | Recipient Hetero |
| HRZ-8-1-60-Oct-1-15 | 2639.0 | 195.0 | CDC30SepPool1 | aIISNP204 | IISNP204 | chr10 | 128019025.0 | C | G | 6.0 | 13964.0 | 0.000429 | 0.999571 | 13970.0 | 13972.0 | 2.0 | 0.000143 | chr10_128018457_128019577 | 569.0 | 0.000429 | 0.999427 | 0.000429 | 0.000429 | G | C | GC | IISNP204 GC | NaN | HRZ-8-1-60-Oct-1-15 | 1.654149 | 0.999857 | True | 0.000165 | 0.000265 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2905.0 | 195.0 | CDC30SepPool1 | aIISNP24 | IISNP24 | chr11 | 5099393.0 | T | A | 13536.0 | 4.0 | 0.999705 | 0.000295 | 13540.0 | 13544.0 | 4.0 | 0.000295 | chr11_5098828_5099937 | 566.0 | 0.000295 | 0.000295 | 0.999409 | 0.000295 | T | A | TA | IISNP24 TA | NaN | HRZ-8-1-8-Oct-1-15 | 1.910967 | 0.999705 | True | 0.000267 | 0.000029 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2906.0 | 195.0 | CDC30SepPool1 | aIISNP38 | IISNP38 | chr11 | 5709028.0 | C | T | 5390.0 | 5015.0 | 0.518020 | 0.481980 | 10405.0 | 10405.0 | 0.0 | 0.000000 | chr11_5708471_5709577 | 558.0 | 0.481980 | 0.481980 | 0.518020 | 0.481980 | C | T | CT | IISNP38 CT | NaN | HRZ-8-1-8-Oct-1-15 | 1.468075 | 1.000000 | True | 0.001140 | 0.480840 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2907.0 | 195.0 | CDC30SepPool1 | aIISNP206 | IISNP206 | chr11 | 8947283.0 | G | C | 4028.0 | 3817.0 | 0.513448 | 0.486552 | 7845.0 | 7847.0 | 2.0 | 0.000255 | chr11_8946706_8947820 | 578.0 | 0.486552 | 0.486428 | 0.513317 | 0.486428 | G | C | GC | IISNP206 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.107159 | 0.999745 | True | 0.000163 | 0.486389 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2908.0 | 195.0 | CDC30SepPool1 | aIISNP84 | IISNP84 | chr11 | 11096221.0 | C | T | 3913.0 | 4532.0 | 0.463351 | 0.536649 | 8445.0 | 8450.0 | 5.0 | 0.000592 | chr11_11095660_11096769 | 562.0 | 0.463351 | 0.536331 | 0.463077 | 0.463077 | T | C | TC | IISNP84 TC | NaN | HRZ-8-1-8-Oct-1-15 | 1.192238 | 0.999408 | True | 0.001852 | 0.461499 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2909.0 | 195.0 | CDC30SepPool1 | aIISNP109 | IISNP109 | chr11 | 11292700.0 | G | C | 11055.0 | 2.0 | 0.999819 | 0.000181 | 11057.0 | 11063.0 | 6.0 | 0.000542 | chr11_11292148_11293259 | 553.0 | 0.000181 | 0.000181 | 0.999277 | 0.000181 | G | C | GC | IISNP109 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.560915 | 0.999458 | True | 0.000163 | 0.000018 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2910.0 | 195.0 | CDC30SepPool1 | aIISNP107 | IISNP107 | chr11 | 17519742.0 | C | G | 0.0 | 2886.0 | 0.000000 | 1.000000 | 2886.0 | 2886.0 | 0.0 | 0.000000 | chr11_17519170_17520279 | 573.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | G | C | GC | IISNP107 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.407195 | 1.000000 | True | 0.000163 | -0.000163 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2911.0 | 195.0 | CDC30SepPool1 | aIISNP127 | IISNP127 | chr11 | 57799371.0 | G | C | 0.0 | 5327.0 | 0.000000 | 1.000000 | 5327.0 | 5327.0 | 0.0 | 0.000000 | chr11_57798787_57799916 | 585.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | C | G | CG | IISNP127 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.751604 | 1.000000 | True | 0.000151 | -0.000151 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2912.0 | 195.0 | CDC30SepPool1 | aIISNP99 | IISNP99 | chr11 | 58318619.0 | C | G | 4716.0 | 4715.0 | 0.500053 | 0.499947 | 9431.0 | 9432.0 | 1.0 | 0.000106 | chr11_58318053_58319181 | 567.0 | 0.499947 | 0.499894 | 0.500000 | 0.499894 | C | G | CG | IISNP99 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.330792 | 0.999894 | True | 0.000151 | 0.499796 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2913.0 | 195.0 | CDC30SepPool1 | aIISNP236 | IISNP236 | chr11 | 65629934.0 | G | C | 364.0 | 13.0 | 0.965517 | 0.034483 | 377.0 | 377.0 | 0.0 | 0.000000 | chr11_65629413_65630524 | 522.0 | 0.034483 | 0.034483 | 0.965517 | 0.034483 | G | C | GC | IISNP236 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.053192 | 1.000000 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2914.0 | 195.0 | CDC30SepPool1 | aIISNP182 | IISNP182 | chr11 | 94231257.0 | C | G | 2.0 | 6194.0 | 0.000323 | 0.999677 | 6196.0 | 6196.0 | 0.0 | 0.000000 | chr11_94230690_94231811 | 568.0 | 0.000323 | 0.999677 | 0.000323 | 0.000323 | G | C | GC | IISNP182 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.874214 | 1.000000 | True | 0.000163 | 0.000160 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2915.0 | 195.0 | CDC30SepPool1 | aIISNP234 | IISNP234 | chr11 | 104869708.0 | G | C | 8003.0 | 7291.0 | 0.523277 | 0.476723 | 15294.0 | 15297.0 | 3.0 | 0.000196 | chr11_104869130_104870257 | 579.0 | 0.476723 | 0.476629 | 0.523174 | 0.476629 | G | C | GC | IISNP234 GC | NaN | HRZ-8-1-8-Oct-1-15 | 2.158303 | 0.999804 | True | 0.000163 | 0.476560 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2916.0 | 195.0 | CDC30SepPool1 | aIISNP73 | IISNP73 | chr11 | 105912984.0 | T | C | 5682.0 | 5477.0 | 0.509185 | 0.490815 | 11159.0 | 11160.0 | 1.0 | 0.000090 | chr11_105912429_105913529 | 556.0 | 0.490815 | 0.490771 | 0.509140 | 0.490771 | T | C | TC | IISNP73 TC | NaN | HRZ-8-1-8-Oct-1-15 | 1.574601 | 0.999910 | True | 0.001852 | 0.488962 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2917.0 | 195.0 | CDC30SepPool1 | aIISNP1 | IISNP1 | chr11 | 115207176.0 | C | G | 0.0 | 2355.0 | 0.000000 | 1.000000 | 2355.0 | 2355.0 | 0.0 | 0.000000 | chr11_115206646_115207761 | 531.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | G | C | GC | IISNP1 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.332275 | 1.000000 | True | 0.000163 | -0.000163 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2918.0 | 195.0 | CDC30SepPool1 | aIISNP245 | IISNP245 | chr11 | 117163824.0 | C | G | 10973.0 | 0.0 | 1.000000 | 0.000000 | 10973.0 | 10979.0 | 6.0 | 0.000546 | chr11_117163245_117164370 | 580.0 | 0.000000 | 0.000000 | 0.999454 | 0.000000 | C | G | CG | IISNP245 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.549063 | 0.999454 | True | 0.000151 | -0.000151 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2919.0 | 195.0 | CDC30SepPool1 | aIISNP71 | IISNP71 | chr11 | 122195989.0 | C | T | 1450.0 | 8.0 | 0.994513 | 0.005487 | 1458.0 | 1458.0 | 0.0 | 0.000000 | chr11_122195414_122196543 | 576.0 | 0.005487 | 0.005487 | 0.994513 | 0.005487 | C | T | CT | IISNP71 CT | NaN | HRZ-8-1-8-Oct-1-15 | 0.205714 | 1.000000 | True | 0.001140 | 0.004347 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2920.0 | 195.0 | CDC30SepPool1 | aIISNP191 | IISNP191 | chr11 | 125763746.0 | C | G | 4.0 | 7875.0 | 0.000508 | 0.999492 | 7879.0 | 7879.0 | 0.0 | 0.000000 | chr11_125763182_125764289 | 565.0 | 0.000508 | 0.999492 | 0.000508 | 0.000508 | G | C | GC | IISNP191 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.111674 | 1.000000 | True | 0.000163 | 0.000345 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2921.0 | 195.0 | CDC30SepPool1 | aIISNP145 | IISNP145 | chr12 | 5021348.0 | G | C | 0.0 | 6044.0 | 0.000000 | 1.000000 | 6044.0 | 6753.0 | 709.0 | 0.104990 | chr12_5020815_5021938 | 534.0 | 0.000000 | 0.895010 | 0.000000 | 0.000000 | C | G | CG | IISNP145 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.952803 | 0.895010 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2922.0 | 195.0 | CDC30SepPool1 | aIISNP47 | IISNP47 | chr12 | 6909442.0 | T | C | 6087.0 | 6895.0 | 0.468880 | 0.531120 | 12982.0 | 12984.0 | 2.0 | 0.000154 | chr12_6908891_6910000 | 552.0 | 0.468880 | 0.531038 | 0.468808 | 0.468808 | C | T | CT | IISNP47 CT | NaN | HRZ-8-1-8-Oct-1-15 | 1.831955 | 0.999846 | True | 0.001140 | 0.467740 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2923.0 | 195.0 | CDC30SepPool1 | aIISNP48 | IISNP48 | chr12 | 6945914.0 | C | G | 3.0 | 7967.0 | 0.000376 | 0.999624 | 7970.0 | 7978.0 | 8.0 | 0.001003 | chr12_6945352_6946456 | 563.0 | 0.000376 | 0.998621 | 0.000376 | 0.000376 | G | C | GC | IISNP48 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.125642 | 0.998997 | True | 0.000163 | 0.000214 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2924.0 | 195.0 | CDC30SepPool1 | aIISNP258 | IISNP258 | chr12 | 14018777.0 | G | C | 8020.0 | 0.0 | 1.000000 | 0.000000 | 8020.0 | 8026.0 | 6.0 | 0.000748 | chr12_14018199_14019328 | 579.0 | 0.000000 | 0.000000 | 0.999252 | 0.000000 | G | C | GC | IISNP258 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.132414 | 0.999252 | True | 0.000163 | -0.000163 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2925.0 | 195.0 | CDC30SepPool1 | aIISNP133 | IISNP133 | chr12 | 14656768.0 | G | C | 1444.0 | 2.0 | 0.998617 | 0.001383 | 1446.0 | 1446.0 | 0.0 | 0.000000 | chr12_14656198_14657327 | 571.0 | 0.001383 | 0.001383 | 0.998617 | 0.001383 | G | C | GC | IISNP133 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.204021 | 1.000000 | True | 0.000163 | 0.001221 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2926.0 | 195.0 | CDC30SepPool1 | aIISNP142 | IISNP142 | chr12 | 31249861.0 | C | G | 2950.0 | 3090.0 | 0.488411 | 0.511589 | 6040.0 | 6046.0 | 6.0 | 0.000992 | chr12_31249317_31250444 | 545.0 | 0.488411 | 0.511082 | 0.487926 | 0.487926 | G | C | GC | IISNP142 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.853050 | 0.999008 | True | 0.000163 | 0.488248 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2927.0 | 195.0 | CDC30SepPool1 | aIISNP132 | IISNP132 | chr12 | 49255798.0 | G | C | 6962.0 | 6761.0 | 0.507323 | 0.492677 | 13723.0 | 13723.0 | 0.0 | 0.000000 | chr12_49255241_49256366 | 558.0 | 0.492677 | 0.492677 | 0.507323 | 0.492677 | G | C | GC | IISNP132 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.936223 | 1.000000 | True | 0.000163 | 0.492514 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2928.0 | 195.0 | CDC30SepPool1 | aIISNP156 | IISNP156 | chr12 | 56827694.0 | C | G | 4750.0 | 3481.0 | 0.577087 | 0.422913 | 8231.0 | 8231.0 | 0.0 | 0.000000 | chr12_56827164_56828284 | 531.0 | 0.422913 | 0.422913 | 0.577087 | 0.422913 | C | G | CG | IISNP156 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.161339 | 1.000000 | True | 0.000151 | 0.422762 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2929.0 | 195.0 | CDC30SepPool1 | aIISNP276 | IISNP276 | chr12 | 88440676.0 | G | C | 5088.0 | 5226.0 | 0.493310 | 0.506690 | 10314.0 | 10314.0 | 0.0 | 0.000000 | chr12_88440104_88441233 | 573.0 | 0.493310 | 0.506690 | 0.493310 | 0.493310 | C | G | CG | IISNP276 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.455236 | 1.000000 | True | 0.000151 | 0.493159 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2930.0 | 195.0 | CDC30SepPool1 | aIISNP26 | IISNP26 | chr12 | 130761696.0 | A | G | 5545.0 | 5200.0 | 0.516054 | 0.483946 | 10745.0 | 10745.0 | 0.0 | 0.000000 | chr12_130761129_130762238 | 568.0 | 0.483946 | 0.483946 | 0.516054 | 0.483946 | A | G | AG | IISNP26 AG | NaN | HRZ-8-1-8-Oct-1-15 | 1.516047 | 1.000000 | True | 0.001817 | 0.482129 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2931.0 | 195.0 | CDC30SepPool1 | aIISNP125 | IISNP125 | chr13 | 25009441.0 | C | G | 3232.0 | 1.0 | 0.999691 | 0.000309 | 3233.0 | 3233.0 | 0.0 | 0.000000 | chr13_25008849_25009978 | 593.0 | 0.000309 | 0.000309 | 0.999691 | 0.000309 | C | G | CG | IISNP125 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.456154 | 1.000000 | True | 0.000151 | 0.000158 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2932.0 | 195.0 | CDC30SepPool1 | aIISNP259 | IISNP259 | chr13 | 73349359.0 | G | C | 2237.0 | 0.0 | 1.000000 | 0.000000 | 2237.0 | 2238.0 | 1.0 | 0.000447 | chr13_73348771_73349897 | 589.0 | 0.000000 | 0.000000 | 0.999553 | 0.000000 | G | C | GC | IISNP259 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.315767 | 0.999553 | True | 0.000163 | -0.000163 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2933.0 | 195.0 | CDC30SepPool1 | aIISNP85 | IISNP85 | chr13 | 84456735.0 | T | C | 5215.0 | 5924.0 | 0.468175 | 0.531825 | 11139.0 | 11139.0 | 0.0 | 0.000000 | chr13_84456181_84457286 | 555.0 | 0.468175 | 0.531825 | 0.468175 | 0.468175 | C | T | CT | IISNP85 CT | NaN | HRZ-8-1-8-Oct-1-15 | 1.571638 | 1.000000 | True | 0.001140 | 0.467035 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2934.0 | 195.0 | CDC30SepPool1 | aIISNP98 | IISNP98 | chr14 | 31355096.0 | C | G | 5116.0 | 3011.0 | 0.629507 | 0.370493 | 8127.0 | 8127.0 | 0.0 | 0.000000 | chr14_31354504_31355624 | 593.0 | 0.370493 | 0.370493 | 0.629507 | 0.370493 | C | G | CG | IISNP98 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.146665 | 1.000000 | True | 0.000151 | 0.370342 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2935.0 | 195.0 | CDC30SepPool1 | aIISNP255 | IISNP255 | chr14 | 50799126.0 | G | C | 3042.0 | 1.0 | 0.999671 | 0.000329 | 3043.0 | 3044.0 | 1.0 | 0.000329 | chr14_50798535_50799661 | 592.0 | 0.000329 | 0.000329 | 0.999343 | 0.000329 | G | C | GC | IISNP255 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.429488 | 0.999671 | True | 0.000163 | 0.000166 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2936.0 | 195.0 | CDC30SepPool1 | aIISNP76 | IISNP76 | chr14 | 53216723.0 | G | C | 561.0 | 6.0 | 0.989418 | 0.010582 | 567.0 | 567.0 | 0.0 | 0.000000 | chr14_53216148_53217276 | 576.0 | 0.010582 | 0.010582 | 0.989418 | 0.010582 | G | C | GC | IISNP76 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.080000 | 1.000000 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2937.0 | 195.0 | CDC30SepPool1 | aIISNP269 | IISNP269 | chr14 | 103440473.0 | G | C | 5884.0 | 2890.0 | 0.670618 | 0.329382 | 8774.0 | 8794.0 | 20.0 | 0.002274 | chr14_103439920_103441032 | 554.0 | 0.329382 | 0.328633 | 0.669093 | 0.328633 | G | C | GC | IISNP269 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.240774 | 0.997726 | True | 0.000163 | 0.329220 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2938.0 | 195.0 | CDC30SepPool1 | aIISNP64 | IISNP64 | chr14 | 104769149.0 | G | A | 4350.0 | 2533.0 | 0.631992 | 0.368008 | 6883.0 | 6883.0 | 0.0 | 0.000000 | chr14_104768569_104769678 | 581.0 | 0.368008 | 0.368008 | 0.631992 | 0.368008 | G | A | GA | IISNP64 GA | NaN | HRZ-8-1-8-Oct-1-15 | 0.971145 | 1.000000 | True | 0.001125 | 0.366883 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2939.0 | 195.0 | CDC30SepPool1 | aIISNP161 | IISNP161 | chr15 | 22960868.0 | G | C | 8941.0 | 4.0 | 0.999553 | 0.000447 | 8945.0 | 8949.0 | 4.0 | 0.000447 | chr15_22960301_22961425 | 568.0 | 0.000447 | 0.000447 | 0.999106 | 0.000447 | G | C | GC | IISNP161 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.262643 | 0.999553 | True | 0.000163 | 0.000285 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2940.0 | 195.0 | CDC30SepPool1 | aIISNP216 | IISNP216 | chr15 | 25925094.0 | C | G | 1866.0 | 3637.0 | 0.339088 | 0.660912 | 5503.0 | 5503.0 | 0.0 | 0.000000 | chr15_25924513_25925623 | 582.0 | 0.339088 | 0.660912 | 0.339088 | 0.339088 | G | C | GC | IISNP216 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.776436 | 1.000000 | True | 0.000163 | 0.338925 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2941.0 | 195.0 | CDC30SepPool1 | aIISNP42 | IISNP42 | chr15 | 39313402.0 | C | G | 12198.0 | 0.0 | 1.000000 | 0.000000 | 12198.0 | 12202.0 | 4.0 | 0.000328 | chr15_39312848_39313954 | 555.0 | 0.000000 | 0.000000 | 0.999672 | 0.000000 | C | G | CG | IISNP42 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.721620 | 0.999672 | True | 0.000151 | -0.000151 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2942.0 | 195.0 | CDC30SepPool1 | aIISNP137 | IISNP137 | chr15 | 40655873.0 | G | C | 3955.0 | 0.0 | 1.000000 | 0.000000 | 3955.0 | 3959.0 | 4.0 | 0.001010 | chr15_40655304_40656417 | 570.0 | 0.000000 | 0.000000 | 0.998990 | 0.000000 | G | C | GC | IISNP137 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.558588 | 0.998990 | True | 0.000163 | -0.000163 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2943.0 | 195.0 | CDC30SepPool1 | aIISNP113 | IISNP113 | chr15 | 78632830.0 | C | G | 2708.0 | 3234.0 | 0.455739 | 0.544261 | 5942.0 | 5942.0 | 0.0 | 0.000000 | chr15_78632267_78633388 | 564.0 | 0.455739 | 0.544261 | 0.455739 | 0.455739 | G | C | GC | IISNP113 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.838376 | 1.000000 | True | 0.000163 | 0.455576 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2944.0 | 195.0 | CDC30SepPool1 | aIISNP270 | IISNP270 | chr15 | 94884108.0 | G | C | 1.0 | 936.0 | 0.001067 | 0.998933 | 937.0 | 937.0 | 0.0 | 0.000000 | chr15_94883526_94884639 | 583.0 | 0.001067 | 0.998933 | 0.001067 | 0.001067 | C | G | CG | IISNP270 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.132204 | 1.000000 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2945.0 | 195.0 | CDC30SepPool1 | aIISNP15 | IISNP15 | chr16 | 5868700.0 | A | G | 6511.0 | 5602.0 | 0.537522 | 0.462478 | 12113.0 | 12117.0 | 4.0 | 0.000330 | chr16_5868144_5869263 | 557.0 | 0.462478 | 0.462326 | 0.537344 | 0.462326 | A | G | AG | IISNP15 AG | NaN | HRZ-8-1-8-Oct-1-15 | 1.709627 | 0.999670 | True | 0.001817 | 0.460662 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2946.0 | 195.0 | CDC30SepPool1 | aIISNP75 | IISNP75 | chr16 | 7520254.0 | C | G | 2145.0 | 1904.0 | 0.529760 | 0.470240 | 4049.0 | 4050.0 | 1.0 | 0.000247 | chr16_7519685_7520809 | 570.0 | 0.470240 | 0.470123 | 0.529630 | 0.470123 | C | G | CG | IISNP75 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.571428 | 0.999753 | True | 0.000151 | 0.470088 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2947.0 | 195.0 | CDC30SepPool1 | aIISNP273 | IISNP273 | chr16 | 8953081.0 | C | G | 0.0 | 13.0 | 0.000000 | 1.000000 | 13.0 | 13.0 | 0.0 | 0.000000 | chr16_8952508_8953628 | 574.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | G | C | GC | IISNP273 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.001834 | 1.000000 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2948.0 | 195.0 | CDC30SepPool1 | aIISNP194 | IISNP194 | chr16 | 11773662.0 | C | G | 1434.0 | 1462.0 | 0.495166 | 0.504834 | 2896.0 | 2896.0 | 0.0 | 0.000000 | chr16_11773071_11774198 | 592.0 | 0.495166 | 0.504834 | 0.495166 | 0.495166 | G | C | GC | IISNP194 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.408606 | 1.000000 | True | 0.000163 | 0.495003 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2949.0 | 195.0 | CDC30SepPool1 | aIISNP271 | IISNP271 | chr16 | 16278869.0 | G | C | 1973.0 | 1816.0 | 0.520718 | 0.479282 | 3789.0 | 3789.0 | 0.0 | 0.000000 | chr16_16278312_16279424 | 558.0 | 0.479282 | 0.479282 | 0.520718 | 0.479282 | G | C | GC | IISNP271 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.534602 | 1.000000 | True | 0.000163 | 0.479120 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2950.0 | 195.0 | CDC30SepPool1 | aIISNP12 | IISNP12 | chr16 | 78017051.0 | C | T | 6412.0 | 6.0 | 0.999065 | 0.000935 | 6418.0 | 6418.0 | 0.0 | 0.000000 | chr16_78016473_78017602 | 579.0 | 0.000935 | 0.000935 | 0.999065 | 0.000935 | C | T | CT | IISNP12 CT | NaN | HRZ-8-1-8-Oct-1-15 | 0.905536 | 1.000000 | True | 0.001140 | -0.000205 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2951.0 | 195.0 | CDC30SepPool1 | aIISNP224 | IISNP224 | chr16 | 84522897.0 | G | C | 2931.0 | 3828.0 | 0.433644 | 0.566356 | 6759.0 | 6759.0 | 0.0 | 0.000000 | chr16_84522346_84523470 | 552.0 | 0.433644 | 0.566356 | 0.433644 | 0.433644 | C | G | CG | IISNP224 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.953649 | 1.000000 | True | 0.000151 | 0.433493 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2952.0 | 195.0 | CDC30SepPool1 | aIISNP168 | IISNP168 | chr16 | 88767769.0 | G | C | 3507.0 | 4.0 | 0.998861 | 0.001139 | 3511.0 | 3515.0 | 4.0 | 0.001138 | chr16_88767192_88768321 | 578.0 | 0.001139 | 0.001138 | 0.997724 | 0.001138 | G | C | GC | IISNP168 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.495943 | 0.998862 | True | 0.000163 | 0.000977 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2953.0 | 195.0 | CDC30SepPool1 | aIISNP90 | IISNP90 | chr17 | 2919393.0 | A | G | 3595.0 | 6693.0 | 0.349436 | 0.650564 | 10288.0 | 10288.0 | 0.0 | 0.000000 | chr17_2918812_2919921 | 582.0 | 0.349436 | 0.650564 | 0.349436 | 0.349436 | G | A | GA | IISNP90 GA | NaN | HRZ-8-1-8-Oct-1-15 | 1.451567 | 1.000000 | True | 0.001125 | 0.348311 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2954.0 | 195.0 | CDC30SepPool1 | aIISNP67 | IISNP67 | chr17 | 6811529.0 | G | A | 149.0 | 25.0 | 0.856322 | 0.143678 | 174.0 | 174.0 | 0.0 | 0.000000 | chr17_6810940_6812066 | 590.0 | 0.143678 | 0.143678 | 0.856322 | 0.143678 | G | A | GA | IISNP67 GA | NaN | HRZ-8-1-8-Oct-1-15 | 0.024550 | 1.000000 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2955.0 | 195.0 | CDC30SepPool1 | aIISNP210 | IISNP210 | chr17 | 7460517.0 | G | C | 532.0 | 498.0 | 0.516505 | 0.483495 | 1030.0 | 1030.0 | 0.0 | 0.000000 | chr17_7459983_7461095 | 535.0 | 0.483495 | 0.483495 | 0.516505 | 0.483495 | G | C | GC | IISNP210 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.145326 | 1.000000 | True | 0.000163 | 0.483333 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2956.0 | 195.0 | CDC30SepPool1 | aIISNP170 | IISNP170 | chr17 | 15217437.0 | C | G | 10250.0 | 14.0 | 0.998636 | 0.001364 | 10264.0 | 10274.0 | 10.0 | 0.000973 | chr17_15216858_15217965 | 580.0 | 0.001364 | 0.001363 | 0.997664 | 0.001363 | C | G | CG | IISNP170 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.449592 | 0.999027 | True | 0.000151 | 0.001213 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2957.0 | 195.0 | CDC30SepPool1 | aIISNP209 | IISNP209 | chr17 | 17696531.0 | G | C | 999.0 | 1307.0 | 0.433218 | 0.566782 | 2306.0 | 2308.0 | 2.0 | 0.000867 | chr17_17695991_17697117 | 541.0 | 0.433218 | 0.566291 | 0.432842 | 0.432842 | C | G | CG | IISNP209 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.325643 | 0.999133 | True | 0.000151 | 0.433066 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2958.0 | 195.0 | CDC30SepPool1 | aIISNP101 | IISNP101 | chr17 | 33998802.0 | G | C | 15990.0 | 1.0 | 0.999937 | 0.000063 | 15991.0 | 16008.0 | 17.0 | 0.001062 | chr17_33998221_33999330 | 582.0 | 0.000063 | 0.000062 | 0.998876 | 0.000062 | G | C | GC | IISNP101 GC | NaN | HRZ-8-1-8-Oct-1-15 | 2.258621 | 0.998938 | True | 0.000163 | -0.000100 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2959.0 | 195.0 | CDC30SepPool1 | aIISNP192 | IISNP192 | chr17 | 35902225.0 | C | G | 3267.0 | 9.0 | 0.997253 | 0.002747 | 3276.0 | 3279.0 | 3.0 | 0.000915 | chr17_35901690_35902813 | 536.0 | 0.002747 | 0.002745 | 0.996340 | 0.002745 | C | G | CG | IISNP192 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.462645 | 0.999085 | True | 0.000151 | 0.002596 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2960.0 | 195.0 | CDC30SepPool1 | aIISNP46 | IISNP46 | chr17 | 41286822.0 | T | G | 5630.0 | 447.0 | 0.926444 | 0.073556 | 6077.0 | 6082.0 | 5.0 | 0.000822 | chr17_41286243_41287360 | 580.0 | 0.073556 | 0.073496 | 0.925682 | 0.073496 | T | G | TG | IISNP46 TG | NaN | HRZ-8-1-8-Oct-1-15 | 0.858129 | 0.999178 | True | 0.000146 | 0.073410 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2961.0 | 195.0 | CDC30SepPool1 | aIISNP81 | IISNP81 | chr17 | 41341984.0 | A | G | 7427.0 | 4.0 | 0.999462 | 0.000538 | 7431.0 | 7432.0 | 1.0 | 0.000135 | chr17_41341424_41342523 | 561.0 | 0.000538 | 0.000538 | 0.999327 | 0.000538 | A | G | AG | IISNP81 AG | NaN | HRZ-8-1-8-Oct-1-15 | 1.048605 | 0.999865 | True | 0.001817 | -0.001278 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2962.0 | 195.0 | CDC30SepPool1 | aIISNP21 | IISNP21 | chr17 | 41691526.0 | G | A | 6.0 | 9664.0 | 0.000620 | 0.999380 | 9670.0 | 9670.0 | 0.0 | 0.000000 | chr17_41690968_41692073 | 559.0 | 0.000620 | 0.999380 | 0.000620 | 0.000620 | A | G | AG | IISNP21 AG | NaN | HRZ-8-1-8-Oct-1-15 | 1.364372 | 1.000000 | True | 0.001817 | -0.001196 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2963.0 | 195.0 | CDC30SepPool1 | aIISNP278 | IISNP278 | chr17 | 42475983.0 | G | C | 5066.0 | 5436.0 | 0.482384 | 0.517616 | 10502.0 | 10504.0 | 2.0 | 0.000190 | chr17_42475406_42476535 | 578.0 | 0.482384 | 0.517517 | 0.482292 | 0.482292 | C | G | CG | IISNP278 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.482043 | 0.999810 | True | 0.000151 | 0.482233 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2964.0 | 195.0 | CDC30SepPool1 | aIISNP23 | IISNP23 | chr17 | 46510697.0 | A | G | 6977.0 | 7500.0 | 0.481937 | 0.518063 | 14477.0 | 14482.0 | 5.0 | 0.000345 | chr17_46510138_46511265 | 560.0 | 0.481937 | 0.517884 | 0.481770 | 0.481770 | G | A | GA | IISNP23 GA | NaN | HRZ-8-1-8-Oct-1-15 | 2.043312 | 0.999655 | True | 0.001125 | 0.480812 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2965.0 | 195.0 | CDC30SepPool1 | aIISNP272 | IISNP272 | chr17 | 48625928.0 | C | G | 537.0 | 732.0 | 0.423168 | 0.576832 | 1269.0 | 1269.0 | 0.0 | 0.000000 | chr17_48625341_48626470 | 588.0 | 0.423168 | 0.576832 | 0.423168 | 0.423168 | G | C | GC | IISNP272 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.179047 | 1.000000 | True | 0.000163 | 0.423005 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2966.0 | 195.0 | CDC30SepPool1 | aIISNP262 | IISNP262 | chr17 | 71232881.0 | G | C | 2.0 | 10703.0 | 0.000187 | 0.999813 | 10705.0 | 10707.0 | 2.0 | 0.000187 | chr17_71232306_71233435 | 576.0 | 0.000187 | 0.999626 | 0.000187 | 0.000187 | C | G | CG | IISNP262 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.510685 | 0.999813 | True | 0.000151 | 0.000035 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2967.0 | 195.0 | CDC30SepPool1 | aIISNP160 | IISNP160 | chr17 | 76449505.0 | G | C | 5524.0 | 4883.0 | 0.530797 | 0.469203 | 10407.0 | 10408.0 | 1.0 | 0.000096 | chr17_76448943_76450062 | 563.0 | 0.469203 | 0.469158 | 0.530746 | 0.469158 | G | C | GC | IISNP160 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.468499 | 0.999904 | True | 0.000163 | 0.469041 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2968.0 | 195.0 | CDC30SepPool1 | aIISNP230 | IISNP230 | chr17 | 78319380.0 | G | C | 5153.0 | 5956.0 | 0.463858 | 0.536142 | 11109.0 | 11113.0 | 4.0 | 0.000360 | chr17_78318816_78319925 | 565.0 | 0.463858 | 0.535949 | 0.463691 | 0.463691 | C | G | CG | IISNP230 CG | NaN | HRZ-8-1-8-Oct-1-15 | 1.567969 | 0.999640 | True | 0.000151 | 0.463707 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2969.0 | 195.0 | CDC30SepPool1 | aIISNP82 | IISNP82 | chr17 | 80461935.0 | C | T | 1301.0 | 1505.0 | 0.463649 | 0.536351 | 2806.0 | 2807.0 | 1.0 | 0.000356 | chr17_80461344_80462465 | 592.0 | 0.463649 | 0.536160 | 0.463484 | 0.463484 | T | C | TC | IISNP82 TC | NaN | HRZ-8-1-8-Oct-1-15 | 0.396049 | 0.999644 | True | 0.001852 | 0.461797 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2970.0 | 195.0 | CDC30SepPool1 | aIISNP51 | IISNP51 | chr17 | 80526139.0 | A | G | 1362.0 | 1274.0 | 0.516692 | 0.483308 | 2636.0 | 2636.0 | 0.0 | 0.000000 | chr17_80525564_80526669 | 576.0 | 0.483308 | 0.483308 | 0.516692 | 0.483308 | A | G | AG | IISNP51 AG | NaN | HRZ-8-1-8-Oct-1-15 | 0.371922 | 1.000000 | True | 0.001817 | 0.481491 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2971.0 | 195.0 | CDC30SepPool1 | aIISNP66 | IISNP66 | chr17 | 80531643.0 | C | G | 1798.0 | 1661.0 | 0.519803 | 0.480197 | 3459.0 | 3459.0 | 0.0 | 0.000000 | chr17_80531082_80532207 | 562.0 | 0.480197 | 0.480197 | 0.519803 | 0.480197 | C | G | CG | IISNP66 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.488042 | 1.000000 | True | 0.000151 | 0.480045 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2972.0 | 195.0 | CDC30SepPool1 | aIISNP74 | IISNP74 | chr17 | 80715702.0 | G | C | 8757.0 | 0.0 | 1.000000 | 0.000000 | 8757.0 | 8763.0 | 6.0 | 0.000685 | chr17_80715140_80716246 | 563.0 | 0.000000 | 0.000000 | 0.999315 | 0.000000 | G | C | GC | IISNP74 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.236400 | 0.999315 | True | 0.000163 | -0.000163 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2973.0 | 195.0 | CDC30SepPool1 | aIISNP52 | IISNP52 | chr17 | 80765788.0 | T | C | 9556.0 | 7.0 | 0.999268 | 0.000732 | 9563.0 | 9563.0 | 0.0 | 0.000000 | chr17_80765219_80766321 | 570.0 | 0.000732 | 0.000732 | 0.999268 | 0.000732 | T | C | TC | IISNP52 TC | NaN | HRZ-8-1-8-Oct-1-15 | 1.349275 | 1.000000 | True | 0.001852 | -0.001120 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2974.0 | 195.0 | CDC30SepPool1 | aIISNP92 | IISNP92 | chr18 | 9749879.0 | G | A | 6318.0 | 6627.0 | 0.488065 | 0.511935 | 12945.0 | 12948.0 | 3.0 | 0.000232 | chr18_9749309_9750416 | 571.0 | 0.488065 | 0.511816 | 0.487952 | 0.487952 | A | G | AG | IISNP92 AG | NaN | HRZ-8-1-8-Oct-1-15 | 1.826875 | 0.999768 | True | 0.001817 | 0.486248 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2975.0 | 195.0 | CDC30SepPool1 | aIISNP87 | IISNP87 | chr18 | 29311034.0 | G | A | 8.0 | 8146.0 | 0.000981 | 0.999019 | 8154.0 | 8157.0 | 3.0 | 0.000368 | chr18_29310484_29311587 | 551.0 | 0.000981 | 0.998651 | 0.000981 | 0.000981 | A | G | AG | IISNP87 AG | NaN | HRZ-8-1-8-Oct-1-15 | 1.150898 | 0.999632 | True | 0.001817 | -0.000836 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2976.0 | 195.0 | CDC30SepPool1 | aIISNP186 | IISNP186 | chr18 | 44561100.0 | C | G | 6829.0 | 49.0 | 0.992876 | 0.007124 | 6878.0 | 6882.0 | 4.0 | 0.000581 | chr18_44560549_44561667 | 552.0 | 0.007124 | 0.007120 | 0.992299 | 0.007120 | C | G | CG | IISNP186 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.971004 | 0.999419 | True | 0.000151 | 0.006973 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2977.0 | 195.0 | CDC30SepPool1 | aIISNP69 | IISNP69 | chr18 | 47371014.0 | C | G | 1.0 | 7615.0 | 0.000131 | 0.999869 | 7616.0 | 7620.0 | 4.0 | 0.000525 | chr18_47370442_47371541 | 573.0 | 0.000131 | 0.999344 | 0.000131 | 0.000131 | G | C | GC | IISNP69 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.075131 | 0.999475 | True | 0.000163 | -0.000031 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2978.0 | 195.0 | CDC30SepPool1 | aIISNP232 | IISNP232 | chr18 | 48333203.0 | C | G | 6686.0 | 1.0 | 0.999850 | 0.000150 | 6687.0 | 6787.0 | 100.0 | 0.014734 | chr18_48332670_48333785 | 534.0 | 0.000150 | 0.000147 | 0.985119 | 0.000147 | C | G | CG | IISNP232 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.957600 | 0.985266 | True | 0.000151 | -0.000002 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2979.0 | 195.0 | CDC30SepPool1 | aIISNP41 | IISNP41 | chr18 | 55225777.0 | T | C | 12564.0 | 51.0 | 0.995957 | 0.004043 | 12615.0 | 12615.0 | 0.0 | 0.000000 | chr18_55225209_55226308 | 569.0 | 0.004043 | 0.004043 | 0.995957 | 0.004043 | T | C | TC | IISNP41 TC | NaN | HRZ-8-1-8-Oct-1-15 | 1.779891 | 1.000000 | True | 0.001852 | 0.002190 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2980.0 | 195.0 | CDC30SepPool1 | aIISNP211 | IISNP211 | chr18 | 56204945.0 | C | G | 0.0 | 10304.0 | 0.000000 | 1.000000 | 10304.0 | 10304.0 | 0.0 | 0.000000 | chr18_56204367_56205474 | 579.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | G | C | GC | IISNP211 GC | NaN | HRZ-8-1-8-Oct-1-15 | 1.453825 | 1.000000 | True | 0.000163 | -0.000163 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2981.0 | 195.0 | CDC30SepPool1 | aIISNP130 | IISNP130 | chr19 | 619021.0 | G | C | 218.0 | 256.0 | 0.459916 | 0.540084 | 474.0 | 474.0 | 0.0 | 0.000000 | chr19_618466_619585 | 556.0 | 0.459916 | 0.540084 | 0.459916 | 0.459916 | C | G | CG | IISNP130 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.066878 | 1.000000 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2982.0 | 195.0 | CDC30SepPool1 | aIISNP226 | IISNP226 | chr19 | 7986638.0 | C | G | 226.0 | 0.0 | 1.000000 | 0.000000 | 226.0 | 226.0 | 0.0 | 0.000000 | chr19_7986080_7987202 | 559.0 | 0.000000 | 0.000000 | 1.000000 | 0.000000 | C | G | CG | IISNP226 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.031887 | 1.000000 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2983.0 | 195.0 | CDC30SepPool1 | aIISNP159 | IISNP159 | chr19 | 10084292.0 | C | G | 15087.0 | 6.0 | 0.999602 | 0.000398 | 15093.0 | 15107.0 | 14.0 | 0.000927 | chr19_10083723_10084832 | 570.0 | 0.000398 | 0.000397 | 0.998676 | 0.000397 | C | G | CG | IISNP159 CG | NaN | HRZ-8-1-8-Oct-1-15 | 2.131496 | 0.999073 | True | 0.000151 | 0.000246 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2984.0 | 195.0 | CDC30SepPool1 | aIISNP100 | IISNP100 | chr19 | 10600442.0 | G | C | 5447.0 | 0.0 | 1.000000 | 0.000000 | 5447.0 | 5447.0 | 0.0 | 0.000000 | chr19_10599851_10600965 | 592.0 | 0.000000 | 0.000000 | 1.000000 | 0.000000 | G | C | GC | IISNP100 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.768535 | 1.000000 | True | 0.000163 | -0.000163 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2985.0 | 195.0 | CDC30SepPool1 | aIISNP217 | IISNP217 | chr19 | 10670184.0 | C | G | 271.0 | 0.0 | 1.000000 | 0.000000 | 271.0 | 271.0 | 0.0 | 0.000000 | chr19_10669614_10670743 | 571.0 | 0.000000 | 0.000000 | 1.000000 | 0.000000 | C | G | CG | IISNP217 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.038236 | 1.000000 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2986.0 | 195.0 | CDC30SepPool1 | aIISNP274 | IISNP274 | chr19 | 18377647.0 | G | C | 2.0 | 2904.0 | 0.000688 | 0.999312 | 2906.0 | 2913.0 | 7.0 | 0.002403 | chr19_18377056_18378185 | 592.0 | 0.000688 | 0.996910 | 0.000687 | 0.000687 | C | G | CG | IISNP274 CG | NaN | HRZ-8-1-8-Oct-1-15 | 0.411005 | 0.997597 | True | 0.000151 | 0.000537 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2987.0 | 195.0 | CDC30SepPool1 | aIISNP171 | IISNP171 | chr19 | 36278470.0 | C | G | 143.0 | 407.0 | 0.260000 | 0.740000 | 550.0 | 552.0 | 2.0 | 0.003623 | chr19_36277889_36279010 | 582.0 | 0.260000 | 0.737319 | 0.259058 | 0.259058 | G | C | GC | IISNP171 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.077883 | 0.996377 | False | NaN | NaN | NaN |
| HRZ-8-1-8-Oct-1-15 | 2988.0 | 195.0 | CDC30SepPool1 | aIISNP13 | IISNP13 | chr19 | 39559807.0 | A | C | 6010.0 | 5077.0 | 0.542076 | 0.457924 | 11087.0 | 11103.0 | 16.0 | 0.001441 | chr19_39559236_39560337 | 572.0 | 0.457924 | 0.457264 | 0.541295 | 0.457264 | A | C | AC | IISNP13 AC | NaN | HRZ-8-1-8-Oct-1-15 | 1.566558 | 0.998559 | True | 0.000148 | 0.457776 | Recipient Hetero |
| HRZ-8-1-8-Oct-1-15 | 2989.0 | 195.0 | CDC30SepPool1 | aIISNP95 | IISNP95 | chr19 | 41939297.0 | C | G | 5.0 | 5074.0 | 0.000984 | 0.999016 | 5079.0 | 5082.0 | 3.0 | 0.000590 | chr19_41938759_41939869 | 539.0 | 0.000984 | 0.998426 | 0.000984 | 0.000984 | G | C | GC | IISNP95 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.717036 | 0.999410 | True | 0.000163 | 0.000822 | Recipient Homo |
| HRZ-8-1-8-Oct-1-15 | 2990.0 | 195.0 | CDC30SepPool1 | aIISNP117 | IISNP117 | chr19 | 44303066.0 | C | G | 902.0 | 1853.0 | 0.327405 | 0.672595 | 2755.0 | 2756.0 | 1.0 | 0.000363 | chr19_44302506_44303626 | 561.0 | 0.327405 | 0.672351 | 0.327286 | 0.327286 | G | C | GC | IISNP117 GC | NaN | HRZ-8-1-8-Oct-1-15 | 0.388853 | 0.999637 | True | 0.000163 | 0.327242 | Recipient Hetero |
| Streck-4-Oct-1-15 | 4127.0 | 195.0 | CDC30SepPool1 | aIISNP202 | IISNP202 | chr6 | 76660551.0 | G | C | 4394.0 | 4716.0 | 0.482327 | 0.517673 | 9110.0 | 9110.0 | 0.0 | 0.000000 | chr6_76659989_76661118 | 563.0 | 0.482327 | 0.517673 | 0.482327 | 0.482327 | C | G | CG | IISNP202 CG | NaN | Streck-4-Oct-1-15 | 1.121965 | 1.000000 | True | 0.000147 | 0.482180 | Recipient Hetero |
| Streck-4-Oct-1-15 | 4128.0 | 195.0 | CDC30SepPool1 | aIISNP36 | IISNP36 | chr6 | 120560694.0 | T | A | 7955.0 | 15.0 | 0.998118 | 0.001882 | 7970.0 | 7972.0 | 2.0 | 0.000251 | chr6_120560128_120561231 | 567.0 | 0.001882 | 0.001882 | 0.997868 | 0.001882 | T | A | TA | IISNP36 TA | NaN | Streck-4-Oct-1-15 | 0.981812 | 0.999749 | True | 0.000300 | 0.001583 | Recipient Homo |
| Streck-4-Oct-1-15 | 4129.0 | 195.0 | CDC30SepPool1 | aIISNP34 | IISNP34 | chr6 | 123894978.0 | C | A | 1768.0 | 5.0 | 0.997180 | 0.002820 | 1773.0 | 1773.0 | 0.0 | 0.000000 | chr6_123894407_123895512 | 572.0 | 0.002820 | 0.002820 | 0.997180 | 0.002820 | C | A | CA | IISNP34 CA | NaN | Streck-4-Oct-1-15 | 0.218358 | 1.000000 | True | 0.000338 | 0.002482 | Recipient Homo |
| Streck-4-Oct-1-15 | 4130.0 | 195.0 | CDC30SepPool1 | aIISNP164 | IISNP164 | chr6 | 126278230.0 | G | C | 3369.0 | 3014.0 | 0.527808 | 0.472192 | 6383.0 | 6384.0 | 1.0 | 0.000157 | chr6_126277677_126278784 | 554.0 | 0.472192 | 0.472118 | 0.527726 | 0.472118 | G | C | GC | IISNP164 GC | NaN | Streck-4-Oct-1-15 | 0.786237 | 0.999843 | True | 0.000167 | 0.472025 | Recipient Hetero |
| Streck-4-Oct-1-15 | 4131.0 | 195.0 | CDC30SepPool1 | aIISNP54 | IISNP54 | chr6 | 127463376.0 | C | A | 1087.0 | 432.0 | 0.715602 | 0.284398 | 1519.0 | 1519.0 | 0.0 | 0.000000 | chr6_127462805_127463913 | 572.0 | 0.284398 | 0.284398 | 0.715602 | 0.284398 | C | A | CA | IISNP54 CA | NaN | Streck-4-Oct-1-15 | 0.187076 | 1.000000 | True | 0.000338 | 0.284060 | Recipient Hetero |
| Streck-4-Oct-1-15 | 4132.0 | 195.0 | CDC30SepPool1 | aIISNP247 | IISNP247 | chr6 | 138413333.0 | G | C | 10523.0 | 13086.0 | 0.445720 | 0.554280 | 23609.0 | 23646.0 | 37.0 | 0.001565 | chr6_138412785_138413907 | 549.0 | 0.445720 | 0.553413 | 0.445022 | 0.445022 | C | G | CG | IISNP247 CG | NaN | Streck-4-Oct-1-15 | 2.912182 | 0.998435 | True | 0.000147 | 0.445573 | Recipient Hetero |
| Streck-4-Oct-1-15 | 4133.0 | 195.0 | CDC30SepPool1 | aIISNP50 | IISNP50 | chr6 | 148761456.0 | G | C | 5321.0 | 4351.0 | 0.550145 | 0.449855 | 9672.0 | 9684.0 | 12.0 | 0.001239 | chr6_148760890_148761999 | 567.0 | 0.449855 | 0.449298 | 0.549463 | 0.449298 | G | C | GC | IISNP50 GC | NaN | Streck-4-Oct-1-15 | 1.192657 | 0.998761 | True | 0.000167 | 0.449688 | Recipient Hetero |
| Streck-4-Oct-1-15 | 4134.0 | 195.0 | CDC30SepPool1 | aIISNP172 | IISNP172 | chr6 | 150209717.0 | C | G | 1400.0 | 1277.0 | 0.522973 | 0.477027 | 2677.0 | 2677.0 | 0.0 | 0.000000 | chr6_150209159_150210278 | 559.0 | 0.477027 | 0.477027 | 0.522973 | 0.477027 | C | G | CG | IISNP172 CG | NaN | Streck-4-Oct-1-15 | 0.329693 | 1.000000 | True | 0.000147 | 0.476880 | Recipient Hetero |
| Streck-4-Oct-1-15 | 4135.0 | 195.0 | CDC30SepPool1 | aIISNP45 | IISNP45 | chr6 | 152697706.0 | C | T | 9539.0 | 15.0 | 0.998430 | 0.001570 | 9554.0 | 9558.0 | 4.0 | 0.000418 | chr6_152697130_152698240 | 577.0 | 0.001570 | 0.001569 | 0.998012 | 0.001569 | C | T | CT | IISNP45 CT | NaN | Streck-4-Oct-1-15 | 1.177139 | 0.999582 | True | 0.001080 | 0.000490 | Recipient Homo |
| Streck-4-Oct-1-15 | 4136.0 | 195.0 | CDC30SepPool1 | aIISNP122 | IISNP122 | chr6 | 170862300.0 | G | C | 7379.0 | 4601.0 | 0.615943 | 0.384057 | 11980.0 | 11986.0 | 6.0 | 0.000501 | chr6_170861722_170862832 | 579.0 | 0.384057 | 0.383865 | 0.615635 | 0.383865 | G | C | GC | IISNP122 GC | NaN | Streck-4-Oct-1-15 | 1.476166 | 0.999499 | True | 0.000167 | 0.383890 | Recipient Hetero |
| Streck-4-Oct-1-15 | 4137.0 | 195.0 | CDC30SepPool1 | aIISNP267 | IISNP267 | chr7 | 4026944.0 | C | G | 4255.0 | 4762.0 | 0.471886 | 0.528114 | 9017.0 | 9030.0 | 13.0 | 0.001440 | chr7_4026399_4027521 | 546.0 | 0.471886 | 0.527353 | 0.471207 | 0.471207 | G | C | GC | IISNP267 GC | NaN | Streck-4-Oct-1-15 | 1.112112 | 0.998560 | True | 0.000167 | 0.471719 | Recipient Hetero |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| AVBlank2-Nov-10-15 | 725.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP176 | IISNP176 | chr5 | 75932965.0 | G | C | 9057.0 | 7745.0 | 0.539043 | 0.460957 | 16802.0 | 16806.0 | 4.0 | 0.000238 | chr5_75932415_75933522 | 551.0 | 0.460957 | 0.460847 | 0.538915 | 0.460847 | G | C | GC | IISNP176 GC | NaN | AVBlank2-Nov-10-15 | 2.069358 | 0.999762 | True | 0.000182 | 0.460775 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 726.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP179 | IISNP179 | chr5 | 78340257.0 | C | G | 9736.0 | 18.0 | 0.998155 | 0.001845 | 9754.0 | 9765.0 | 11.0 | 0.001126 | chr5_78339702_78340831 | 556.0 | 0.001845 | 0.001843 | 0.997030 | 0.001843 | C | G | CG | IISNP179 CG | NaN | AVBlank2-Nov-10-15 | 1.202385 | 0.998874 | True | 0.000187 | 0.001658 | Recipient Homo |
| AVBlank2-Nov-10-15 | 727.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP9 | IISNP9 | chr5 | 136633338.0 | G | A | 5317.0 | 5170.0 | 0.507009 | 0.492991 | 10487.0 | 10489.0 | 2.0 | 0.000191 | chr5_136632784_136633892 | 555.0 | 0.492991 | 0.492897 | 0.506912 | 0.492897 | G | A | GA | IISNP9 GA | NaN | AVBlank2-Nov-10-15 | 1.291532 | 0.999809 | True | 0.000987 | 0.492004 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 728.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP177 | IISNP177 | chr5 | 140531746.0 | C | G | 762.0 | 408.0 | 0.651282 | 0.348718 | 1170.0 | 1171.0 | 1.0 | 0.000854 | chr5_140531170_140532269 | 577.0 | 0.348718 | 0.348420 | 0.650726 | 0.348420 | C | G | CG | IISNP177 CG | NaN | AVBlank2-Nov-10-15 | 0.144188 | 0.999146 | True | 0.000187 | 0.348531 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 729.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP106 | IISNP106 | chr5 | 145442203.0 | G | C | 9.0 | 9476.0 | 0.000949 | 0.999051 | 9485.0 | 9493.0 | 8.0 | 0.000843 | chr5_145441622_145442735 | 582.0 | 0.000949 | 0.998209 | 0.000948 | 0.000948 | C | G | CG | IISNP106 CG | NaN | AVBlank2-Nov-10-15 | 1.168893 | 0.999157 | True | 0.000187 | 0.000762 | Recipient Homo |
| AVBlank2-Nov-10-15 | 730.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP80 | IISNP80 | chr5 | 159487953.0 | G | A | 2.0 | 863.0 | 0.002312 | 0.997688 | 865.0 | 865.0 | 0.0 | 0.000000 | chr5_159487382_159488507 | 572.0 | 0.002312 | 0.997688 | 0.002312 | 0.002312 | A | G | AG | IISNP80 AG | NaN | AVBlank2-Nov-10-15 | 0.106509 | 1.000000 | False | NaN | NaN | NaN |
| AVBlank2-Nov-10-15 | 731.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP123 | IISNP123 | chr5 | 161119125.0 | C | G | 2007.0 | 2129.0 | 0.485251 | 0.514749 | 4136.0 | 4136.0 | 0.0 | 0.000000 | chr5_161118544_161119671 | 582.0 | 0.485251 | 0.514749 | 0.485251 | 0.485251 | G | C | GC | IISNP123 GC | NaN | AVBlank2-Nov-10-15 | 0.509274 | 1.000000 | True | 0.000182 | 0.485069 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 732.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP58 | IISNP58 | chr5 | 169735920.0 | A | C | 6758.0 | 6390.0 | 0.513995 | 0.486005 | 13148.0 | 13150.0 | 2.0 | 0.000152 | chr5_169735367_169736476 | 554.0 | 0.486005 | 0.485932 | 0.513916 | 0.485932 | A | C | AC | IISNP58 AC | NaN | AVBlank2-Nov-10-15 | 1.619187 | 0.999848 | True | 0.000181 | 0.485824 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 733.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP115 | IISNP115 | chr5 | 176863519.0 | G | C | 2.0 | 5661.0 | 0.000353 | 0.999647 | 5663.0 | 5668.0 | 5.0 | 0.000882 | chr5_176862952_176864062 | 568.0 | 0.000353 | 0.998765 | 0.000353 | 0.000353 | C | G | CG | IISNP115 CG | NaN | AVBlank2-Nov-10-15 | 0.697913 | 0.999118 | True | 0.000187 | 0.000166 | Recipient Homo |
| AVBlank2-Nov-10-15 | 525.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP79 | IISNP79 | chr1 | 14155402.0 | G | A | 17.0 | 10112.0 | 0.001678 | 0.998322 | 10129.0 | 10129.0 | 0.0 | 0.000000 | chr1_14154833_14155962 | 570.0 | 0.001678 | 0.998322 | 0.001678 | 0.001678 | A | G | AG | IISNP79 AG | NaN | AVBlank2-Nov-10-15 | 1.247205 | 1.000000 | True | 0.001456 | 0.000222 | Recipient Homo |
| AVBlank2-Nov-10-15 | 526.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP275 | IISNP275 | chr1 | 17660499.0 | G | C | 10608.0 | 11371.0 | 0.482643 | 0.517357 | 21979.0 | 22014.0 | 35.0 | 0.001590 | chr1_17659939_17661046 | 561.0 | 0.482643 | 0.516535 | 0.481875 | 0.481875 | C | G | CG | IISNP275 CG | NaN | AVBlank2-Nov-10-15 | 2.710629 | 0.998410 | True | 0.000187 | 0.482456 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 527.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP96 | IISNP96 | chr1 | 19447843.0 | C | G | 8804.0 | 8854.0 | 0.498584 | 0.501416 | 17658.0 | 17663.0 | 5.0 | 0.000283 | chr1_19447280_19448406 | 564.0 | 0.498584 | 0.501274 | 0.498443 | 0.498443 | G | C | GC | IISNP96 GC | NaN | AVBlank2-Nov-10-15 | 2.174882 | 0.999717 | True | 0.000182 | 0.498402 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 528.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP152 | IISNP152 | chr1 | 22216604.0 | C | G | 2.0 | 2353.0 | 0.000849 | 0.999151 | 2355.0 | 2355.0 | 0.0 | 0.000000 | chr1_22216012_22217133 | 593.0 | 0.000849 | 0.999151 | 0.000849 | 0.000849 | G | C | GC | IISNP152 GC | NaN | AVBlank2-Nov-10-15 | 0.289976 | 1.000000 | True | 0.000182 | 0.000667 | Recipient Homo |
| AVBlank2-Nov-10-15 | 529.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP265 | IISNP265 | chr1 | 47799639.0 | G | C | 1062.0 | 1049.0 | 0.503079 | 0.496921 | 2111.0 | 2113.0 | 2.0 | 0.000947 | chr1_47799106_47800221 | 534.0 | 0.496921 | 0.496451 | 0.502603 | 0.496451 | G | C | GC | IISNP265 GC | NaN | AVBlank2-Nov-10-15 | 0.260178 | 0.999053 | True | 0.000182 | 0.496739 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 530.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP180 | IISNP180 | chr1 | 62516683.0 | G | C | 18667.0 | 6.0 | 0.999679 | 0.000321 | 18673.0 | 18673.0 | 0.0 | 0.000000 | chr1_62516111_62517226 | 573.0 | 0.000321 | 0.000321 | 0.999679 | 0.000321 | G | C | GC | IISNP180 GC | NaN | AVBlank2-Nov-10-15 | 2.299245 | 1.000000 | True | 0.000182 | 0.000139 | Recipient Homo |
| AVBlank2-Nov-10-15 | 531.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP111 | IISNP111 | chr1 | 75097426.0 | G | C | 11844.0 | 44.0 | 0.996299 | 0.003701 | 11888.0 | 11924.0 | 36.0 | 0.003019 | chr1_75096893_75098000 | 534.0 | 0.003701 | 0.003690 | 0.993291 | 0.003690 | G | C | GC | IISNP111 GC | NaN | AVBlank2-Nov-10-15 | 1.468227 | 0.996981 | True | 0.000182 | 0.003519 | Recipient Homo |
| AVBlank2-Nov-10-15 | 532.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP162 | IISNP162 | chr1 | 87101375.0 | C | G | 11.0 | 23125.0 | 0.000475 | 0.999525 | 23136.0 | 23139.0 | 3.0 | 0.000130 | chr1_87100813_87101939 | 563.0 | 0.000475 | 0.999395 | 0.000475 | 0.000475 | G | C | GC | IISNP162 GC | NaN | AVBlank2-Nov-10-15 | 2.849153 | 0.999870 | True | 0.000182 | 0.000293 | Recipient Homo |
| AVBlank2-Nov-10-15 | 533.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP68 | IISNP68 | chr1 | 105717631.0 | A | G | 1616.0 | 3366.0 | 0.324368 | 0.675632 | 4982.0 | 4984.0 | 2.0 | 0.000401 | chr1_105717077_105718184 | 555.0 | 0.324368 | 0.675361 | 0.324238 | 0.324238 | G | A | GA | IISNP68 GA | NaN | AVBlank2-Nov-10-15 | 0.613690 | 0.999599 | True | 0.000987 | 0.323380 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 534.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP268 | IISNP268 | chr1 | 111957097.0 | C | G | 10663.0 | 9200.0 | 0.536827 | 0.463173 | 19863.0 | 19870.0 | 7.0 | 0.000352 | chr1_111956532_111957661 | 566.0 | 0.463173 | 0.463010 | 0.536638 | 0.463010 | C | G | CG | IISNP268 CG | NaN | AVBlank2-Nov-10-15 | 2.446634 | 0.999648 | True | 0.000187 | 0.462986 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 535.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP222 | IISNP222 | chr1 | 150526044.0 | G | C | 6372.0 | 5156.0 | 0.552741 | 0.447259 | 11528.0 | 11537.0 | 9.0 | 0.000780 | chr1_150525491_150526617 | 554.0 | 0.447259 | 0.446910 | 0.552310 | 0.446910 | G | C | GC | IISNP222 GC | NaN | AVBlank2-Nov-10-15 | 1.420575 | 0.999220 | True | 0.000182 | 0.447077 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 536.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP227 | IISNP227 | chr1 | 152732436.0 | G | C | 4069.0 | 4023.0 | 0.502842 | 0.497158 | 8092.0 | 8097.0 | 5.0 | 0.000618 | chr1_152731903_152733020 | 534.0 | 0.497158 | 0.496851 | 0.502532 | 0.496851 | G | C | GC | IISNP227 GC | NaN | AVBlank2-Nov-10-15 | 0.997000 | 0.999382 | True | 0.000182 | 0.496976 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 537.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP102 | IISNP102 | chr1 | 154744807.0 | C | G | 5654.0 | 5835.0 | 0.492123 | 0.507877 | 11489.0 | 11491.0 | 2.0 | 0.000174 | chr1_154744236_154745348 | 572.0 | 0.492123 | 0.507789 | 0.492037 | 0.492037 | G | C | GC | IISNP102 GC | NaN | AVBlank2-Nov-10-15 | 1.414911 | 0.999826 | True | 0.000182 | 0.491941 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 538.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP3 | IISNP3 | chr1 | 160786670.0 | A | G | 15649.0 | 8.0 | 0.999489 | 0.000511 | 15657.0 | 15659.0 | 2.0 | 0.000128 | chr1_160786113_160787219 | 558.0 | 0.000511 | 0.000511 | 0.999361 | 0.000511 | A | G | AG | IISNP3 AG | NaN | AVBlank2-Nov-10-15 | 1.928125 | 0.999872 | True | 0.001456 | -0.000945 | Recipient Homo |
| AVBlank2-Nov-10-15 | 539.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP214 | IISNP214 | chr1 | 161019040.0 | G | C | 4071.0 | 4349.0 | 0.483492 | 0.516508 | 8420.0 | 8424.0 | 4.0 | 0.000475 | chr1_161018464_161019586 | 577.0 | 0.483492 | 0.516263 | 0.483262 | 0.483262 | C | G | CG | IISNP214 CG | NaN | AVBlank2-Nov-10-15 | 1.037265 | 0.999525 | True | 0.000187 | 0.483305 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 540.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP242 | IISNP242 | chr1 | 179876988.0 | C | G | 3.0 | 21134.0 | 0.000142 | 0.999858 | 21137.0 | 21139.0 | 2.0 | 0.000095 | chr1_179876419_179877532 | 570.0 | 0.000142 | 0.999763 | 0.000142 | 0.000142 | G | C | GC | IISNP242 GC | NaN | AVBlank2-Nov-10-15 | 2.602889 | 0.999905 | True | 0.000182 | -0.000040 | Recipient Homo |
| AVBlank2-Nov-10-15 | 541.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP264 | IISNP264 | chr1 | 205554085.0 | G | C | 6.0 | 13262.0 | 0.000452 | 0.999548 | 13268.0 | 13280.0 | 12.0 | 0.000904 | chr1_205553518_205554618 | 568.0 | 0.000452 | 0.998645 | 0.000452 | 0.000452 | C | G | CG | IISNP264 CG | NaN | AVBlank2-Nov-10-15 | 1.635194 | 0.999096 | True | 0.000187 | 0.000265 | Recipient Homo |
| AVBlank2-Nov-10-15 | 542.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP257 | IISNP257 | chr1 | 214837110.0 | C | G | 6.0 | 8807.0 | 0.000681 | 0.999319 | 8813.0 | 8813.0 | 0.0 | 0.000000 | chr1_214836531_214837646 | 580.0 | 0.000681 | 0.999319 | 0.000681 | 0.000681 | G | C | GC | IISNP257 GC | NaN | AVBlank2-Nov-10-15 | 1.085163 | 1.000000 | True | 0.000182 | 0.000499 | Recipient Homo |
| AVBlank2-Nov-10-15 | 628.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP82 | IISNP82 | chr17 | 80461935.0 | C | T | 568.0 | 1614.0 | 0.260312 | 0.739688 | 2182.0 | 2184.0 | 2.0 | 0.000916 | chr17_80461344_80462465 | 592.0 | 0.260312 | 0.739011 | 0.260073 | 0.260073 | T | C | TC | IISNP82 TC | NaN | AVBlank2-Nov-10-15 | 0.268920 | 0.999084 | True | 0.001475 | 0.258836 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 629.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP51 | IISNP51 | chr17 | 80526139.0 | A | G | 796.0 | 469.0 | 0.629249 | 0.370751 | 1265.0 | 1265.0 | 0.0 | 0.000000 | chr17_80525564_80526669 | 576.0 | 0.370751 | 0.370751 | 0.629249 | 0.370751 | A | G | AG | IISNP51 AG | NaN | AVBlank2-Nov-10-15 | 0.155762 | 1.000000 | True | 0.001456 | 0.369295 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 630.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP66 | IISNP66 | chr17 | 80531643.0 | C | G | 4124.0 | 1765.0 | 0.700289 | 0.299711 | 5889.0 | 5892.0 | 3.0 | 0.000509 | chr17_80531082_80532207 | 562.0 | 0.299711 | 0.299559 | 0.699932 | 0.299559 | C | G | CG | IISNP66 CG | NaN | AVBlank2-Nov-10-15 | 0.725494 | 0.999491 | True | 0.000187 | 0.299524 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 631.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP74 | IISNP74 | chr17 | 80715702.0 | G | C | 10449.0 | 6.0 | 0.999426 | 0.000574 | 10455.0 | 10456.0 | 1.0 | 0.000096 | chr17_80715140_80716246 | 563.0 | 0.000574 | 0.000574 | 0.999331 | 0.000574 | G | C | GC | IISNP74 GC | NaN | AVBlank2-Nov-10-15 | 1.287469 | 0.999904 | True | 0.000182 | 0.000392 | Recipient Homo |
| AVBlank2-Nov-10-15 | 632.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP52 | IISNP52 | chr17 | 80765788.0 | T | C | 8951.0 | 2.0 | 0.999777 | 0.000223 | 8953.0 | 8959.0 | 6.0 | 0.000670 | chr17_80765219_80766321 | 570.0 | 0.000223 | 0.000223 | 0.999107 | 0.000223 | T | C | TC | IISNP52 TC | NaN | AVBlank2-Nov-10-15 | 1.103140 | 0.999330 | True | 0.001475 | -0.001252 | Recipient Homo |
| AVBlank2-Nov-10-15 | 633.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP92 | IISNP92 | chr18 | 9749879.0 | G | A | 6244.0 | 6598.0 | 0.486217 | 0.513783 | 12842.0 | 12847.0 | 5.0 | 0.000389 | chr18_9749309_9750416 | 571.0 | 0.486217 | 0.513583 | 0.486028 | 0.486028 | A | G | AG | IISNP92 AG | NaN | AVBlank2-Nov-10-15 | 1.581878 | 0.999611 | True | 0.001456 | 0.484761 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 634.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP87 | IISNP87 | chr18 | 29311034.0 | G | A | 3268.0 | 3907.0 | 0.455470 | 0.544530 | 7175.0 | 7175.0 | 0.0 | 0.000000 | chr18_29310484_29311587 | 551.0 | 0.455470 | 0.544530 | 0.455470 | 0.455470 | A | G | AG | IISNP87 AG | NaN | AVBlank2-Nov-10-15 | 0.883473 | 1.000000 | True | 0.001456 | 0.454014 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 635.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP186 | IISNP186 | chr18 | 44561100.0 | C | G | 3709.0 | 4277.0 | 0.464438 | 0.535562 | 7986.0 | 7989.0 | 3.0 | 0.000376 | chr18_44560549_44561667 | 552.0 | 0.464438 | 0.535361 | 0.464263 | 0.464263 | G | C | GC | IISNP186 GC | NaN | AVBlank2-Nov-10-15 | 0.983702 | 0.999624 | True | 0.000182 | 0.464256 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 636.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP69 | IISNP69 | chr18 | 47371014.0 | C | G | 9.0 | 10479.0 | 0.000858 | 0.999142 | 10488.0 | 10490.0 | 2.0 | 0.000191 | chr18_47370442_47371541 | 573.0 | 0.000858 | 0.998951 | 0.000858 | 0.000858 | G | C | GC | IISNP69 GC | NaN | AVBlank2-Nov-10-15 | 1.291655 | 0.999809 | True | 0.000182 | 0.000676 | Recipient Homo |
| AVBlank2-Nov-10-15 | 637.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP232 | IISNP232 | chr18 | 48333203.0 | C | G | 6398.0 | 3.0 | 0.999531 | 0.000469 | 6401.0 | 6493.0 | 92.0 | 0.014169 | chr18_48332670_48333785 | 534.0 | 0.000469 | 0.000462 | 0.985369 | 0.000462 | C | G | CG | IISNP232 CG | NaN | AVBlank2-Nov-10-15 | 0.799497 | 0.985831 | True | 0.000187 | 0.000282 | Recipient Homo |
| AVBlank2-Nov-10-15 | 638.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP41 | IISNP41 | chr18 | 55225777.0 | T | C | 15.0 | 9880.0 | 0.001516 | 0.998484 | 9895.0 | 9895.0 | 0.0 | 0.000000 | chr18_55225209_55226308 | 569.0 | 0.001516 | 0.998484 | 0.001516 | 0.001516 | C | T | CT | IISNP41 CT | NaN | AVBlank2-Nov-10-15 | 1.218392 | 1.000000 | True | 0.000984 | 0.000532 | Recipient Homo |
| AVBlank2-Nov-10-15 | 639.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP211 | IISNP211 | chr18 | 56204945.0 | C | G | 5634.0 | 7166.0 | 0.440156 | 0.559844 | 12800.0 | 12805.0 | 5.0 | 0.000390 | chr18_56204367_56205474 | 579.0 | 0.440156 | 0.559625 | 0.439984 | 0.439984 | G | C | GC | IISNP211 GC | NaN | AVBlank2-Nov-10-15 | 1.576706 | 0.999610 | True | 0.000182 | 0.439974 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 543.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP19 | IISNP19 | chr1 | 233448413.0 | C | T | 4036.0 | 3672.0 | 0.523612 | 0.476388 | 7708.0 | 7708.0 | 0.0 | 0.000000 | chr1_233447873_233448982 | 541.0 | 0.476388 | 0.476388 | 0.523612 | 0.476388 | C | T | CT | IISNP19 CT | NaN | AVBlank2-Nov-10-15 | 0.949102 | 1.000000 | True | 0.000984 | 0.475404 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 544.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP238 | IISNP238 | chr1 | 234041422.0 | G | C | 3.0 | 9249.0 | 0.000324 | 0.999676 | 9252.0 | 9252.0 | 0.0 | 0.000000 | chr1_234040863_234041981 | 560.0 | 0.000324 | 0.999676 | 0.000324 | 0.000324 | C | G | CG | IISNP238 CG | NaN | AVBlank2-Nov-10-15 | 1.139218 | 1.000000 | True | 0.000187 | 0.000137 | Recipient Homo |
| AVBlank2-Nov-10-15 | 545.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP104 | IISNP104 | chr1 | 236381825.0 | G | C | 3316.0 | 0.0 | 1.000000 | 0.000000 | 3316.0 | 3316.0 | 0.0 | 0.000000 | chr1_236381266_236382387 | 560.0 | 0.000000 | 0.000000 | 1.000000 | 0.000000 | G | C | GC | IISNP104 GC | NaN | AVBlank2-Nov-10-15 | 0.408306 | 1.000000 | True | 0.000182 | -0.000182 | Recipient Homo |
| AVBlank2-Nov-10-15 | 546.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP83 | IISNP83 | chr1 | 239881926.0 | A | G | 8857.0 | 2.0 | 0.999774 | 0.000226 | 8859.0 | 8863.0 | 4.0 | 0.000451 | chr1_239881353_239882471 | 574.0 | 0.000226 | 0.000226 | 0.999323 | 0.000226 | A | G | AG | IISNP83 AG | NaN | AVBlank2-Nov-10-15 | 1.091320 | 0.999549 | True | 0.001456 | -0.001230 | Recipient Homo |
| AVBlank2-Nov-10-15 | 734.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP60 | IISNP60 | chr5 | 178690725.0 | G | A | 9014.0 | 17.0 | 0.998118 | 0.001882 | 9031.0 | 9031.0 | 0.0 | 0.000000 | chr5_178690152_178691259 | 574.0 | 0.001882 | 0.001882 | 0.998118 | 0.001882 | G | A | GA | IISNP60 GA | NaN | AVBlank2-Nov-10-15 | 1.112006 | 1.000000 | True | 0.000987 | 0.000895 | Recipient Homo |
| AVBlank2-Nov-10-15 | 735.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP225 | IISNP225 | chr5 | 180046344.0 | G | C | 0.0 | 1454.0 | 0.000000 | 1.000000 | 1454.0 | 1454.0 | 0.0 | 0.000000 | chr5_180045793_180046900 | 552.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | C | G | CG | IISNP225 CG | NaN | AVBlank2-Nov-10-15 | 0.179034 | 1.000000 | True | 0.000187 | -0.000187 | Recipient Homo |
| AVBlank2-Nov-10-15 | 736.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP32 | IISNP32 | chr6 | 12059954.0 | G | A | 3511.0 | 3197.0 | 0.523405 | 0.476595 | 6708.0 | 6712.0 | 4.0 | 0.000596 | chr6_12059397_12060504 | 558.0 | 0.476595 | 0.476311 | 0.523093 | 0.476311 | G | A | GA | IISNP32 GA | NaN | AVBlank2-Nov-10-15 | 0.826462 | 0.999404 | True | 0.000987 | 0.475608 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 640.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP130 | IISNP130 | chr19 | 619021.0 | G | C | 254.0 | 0.0 | 1.000000 | 0.000000 | 254.0 | 254.0 | 0.0 | 0.000000 | chr19_618466_619585 | 556.0 | 0.000000 | 0.000000 | 1.000000 | 0.000000 | G | C | GC | IISNP130 GC | NaN | AVBlank2-Nov-10-15 | 0.031276 | 1.000000 | False | NaN | NaN | NaN |
| AVBlank2-Nov-10-15 | 641.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP226 | IISNP226 | chr19 | 7986638.0 | C | G | 0.0 | 1088.0 | 0.000000 | 1.000000 | 1088.0 | 1088.0 | 0.0 | 0.000000 | chr19_7986080_7987202 | 559.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | G | C | GC | IISNP226 GC | NaN | AVBlank2-Nov-10-15 | 0.133968 | 1.000000 | True | 0.000182 | -0.000182 | Recipient Homo |
| AVBlank2-Nov-10-15 | 642.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP159 | IISNP159 | chr19 | 10084292.0 | C | G | 4315.0 | 4.0 | 0.999074 | 0.000926 | 4319.0 | 4322.0 | 3.0 | 0.000694 | chr19_10083723_10084832 | 570.0 | 0.000926 | 0.000925 | 0.998380 | 0.000925 | C | G | CG | IISNP159 CG | NaN | AVBlank2-Nov-10-15 | 0.532177 | 0.999306 | True | 0.000187 | 0.000739 | Recipient Homo |
| AVBlank2-Nov-10-15 | 643.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP100 | IISNP100 | chr19 | 10600442.0 | G | C | 3334.0 | 3118.0 | 0.516739 | 0.483261 | 6452.0 | 6455.0 | 3.0 | 0.000465 | chr19_10599851_10600965 | 592.0 | 0.483261 | 0.483036 | 0.516499 | 0.483036 | G | C | GC | IISNP100 GC | NaN | AVBlank2-Nov-10-15 | 0.794818 | 0.999535 | True | 0.000182 | 0.483079 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 644.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP217 | IISNP217 | chr19 | 10670184.0 | C | G | 39.0 | 65.0 | 0.375000 | 0.625000 | 104.0 | 104.0 | 0.0 | 0.000000 | chr19_10669614_10670743 | 571.0 | 0.375000 | 0.625000 | 0.375000 | 0.375000 | G | C | GC | IISNP217 GC | NaN | AVBlank2-Nov-10-15 | 0.012806 | 1.000000 | False | NaN | NaN | NaN |
| AVBlank2-Nov-10-15 | 645.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP274 | IISNP274 | chr19 | 18377647.0 | G | C | 1136.0 | 1393.0 | 0.449189 | 0.550811 | 2529.0 | 2536.0 | 7.0 | 0.002760 | chr19_18377056_18378185 | 592.0 | 0.449189 | 0.549290 | 0.447950 | 0.447950 | C | G | CG | IISNP274 CG | NaN | AVBlank2-Nov-10-15 | 0.312263 | 0.997240 | True | 0.000187 | 0.449002 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 646.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP171 | IISNP171 | chr19 | 36278470.0 | C | G | 113.0 | 0.0 | 1.000000 | 0.000000 | 113.0 | 113.0 | 0.0 | 0.000000 | chr19_36277889_36279010 | 582.0 | 0.000000 | 0.000000 | 1.000000 | 0.000000 | C | G | CG | IISNP171 CG | NaN | AVBlank2-Nov-10-15 | 0.013914 | 1.000000 | False | NaN | NaN | NaN |
| AVBlank2-Nov-10-15 | 647.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP13 | IISNP13 | chr19 | 39559807.0 | A | C | 7381.0 | 6094.0 | 0.547755 | 0.452245 | 13475.0 | 13482.0 | 7.0 | 0.000519 | chr19_39559236_39560337 | 572.0 | 0.452245 | 0.452010 | 0.547471 | 0.452010 | A | C | AC | IISNP13 AC | NaN | AVBlank2-Nov-10-15 | 1.660067 | 0.999481 | True | 0.000181 | 0.452064 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 648.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP95 | IISNP95 | chr19 | 41939297.0 | C | G | 2404.0 | 2519.0 | 0.488320 | 0.511680 | 4923.0 | 4927.0 | 4.0 | 0.000812 | chr19_41938759_41939869 | 539.0 | 0.488320 | 0.511264 | 0.487924 | 0.487924 | G | C | GC | IISNP95 GC | NaN | AVBlank2-Nov-10-15 | 0.606672 | 0.999188 | True | 0.000182 | 0.488138 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 649.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP117 | IISNP117 | chr19 | 44303066.0 | C | G | 752.0 | 1366.0 | 0.355052 | 0.644948 | 2118.0 | 2120.0 | 2.0 | 0.000943 | chr19_44302506_44303626 | 561.0 | 0.355052 | 0.644340 | 0.354717 | 0.354717 | G | C | GC | IISNP117 GC | NaN | AVBlank2-Nov-10-15 | 0.261040 | 0.999057 | True | 0.000182 | 0.354870 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 650.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP136 | IISNP136 | chr19 | 44981883.0 | C | G | 4728.0 | 11.0 | 0.997679 | 0.002321 | 4739.0 | 4741.0 | 2.0 | 0.000422 | chr19_44981323_44982437 | 561.0 | 0.002321 | 0.002320 | 0.997258 | 0.002320 | C | G | CG | IISNP136 CG | NaN | AVBlank2-Nov-10-15 | 0.583769 | 0.999578 | True | 0.000187 | 0.002134 | Recipient Homo |
| AVBlank2-Nov-10-15 | 651.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP126 | IISNP126 | chr19 | 48621036.0 | C | G | 10732.0 | 9512.0 | 0.530132 | 0.469868 | 20244.0 | 20265.0 | 21.0 | 0.001036 | chr19_48620482_48621601 | 555.0 | 0.469868 | 0.469381 | 0.529583 | 0.469381 | C | G | CG | IISNP126 CG | NaN | AVBlank2-Nov-10-15 | 2.495271 | 0.998964 | True | 0.000187 | 0.469681 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 652.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP218 | IISNP218 | chr19 | 52115645.0 | G | C | 0.0 | 5036.0 | 0.000000 | 1.000000 | 5036.0 | 5036.0 | 0.0 | 0.000000 | chr19_52115107_52116208 | 539.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | C | G | CG | IISNP218 CG | NaN | AVBlank2-Nov-10-15 | 0.620093 | 1.000000 | True | 0.000187 | -0.000187 | Recipient Homo |
| AVBlank2-Nov-10-15 | 653.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP190 | IISNP190 | chr19 | 53344118.0 | C | G | 6.0 | 12280.0 | 0.000488 | 0.999512 | 12286.0 | 12288.0 | 2.0 | 0.000163 | chr19_53343564_53344688 | 555.0 | 0.000488 | 0.999349 | 0.000488 | 0.000488 | G | C | GC | IISNP190 GC | NaN | AVBlank2-Nov-10-15 | 1.513047 | 0.999837 | True | 0.000182 | 0.000306 | Recipient Homo |
| AVBlank2-Nov-10-15 | 654.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP199 | IISNP199 | chr19 | 54664209.0 | G | C | 9934.0 | 8.0 | 0.999195 | 0.000805 | 9942.0 | 9942.0 | 0.0 | 0.000000 | chr19_54663644_54664769 | 566.0 | 0.000805 | 0.000805 | 0.999195 | 0.000805 | G | C | GC | IISNP199 GC | NaN | AVBlank2-Nov-10-15 | 1.224179 | 1.000000 | True | 0.000182 | 0.000623 | Recipient Homo |
| AVBlank2-Nov-10-15 | 737.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP279 | IISNP279 | chr6 | 26509330.0 | C | G | 8385.0 | 5818.0 | 0.590368 | 0.409632 | 14203.0 | 14211.0 | 8.0 | 0.000563 | chr6_26508757_26509875 | 574.0 | 0.409632 | 0.409401 | 0.590036 | 0.409401 | C | G | CG | IISNP279 CG | NaN | AVBlank2-Nov-10-15 | 1.749830 | 0.999437 | True | 0.000187 | 0.409445 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 738.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP261 | IISNP261 | chr6 | 36287312.0 | G | C | 3768.0 | 3450.0 | 0.522028 | 0.477972 | 7218.0 | 7218.0 | 0.0 | 0.000000 | chr6_36286765_36287879 | 548.0 | 0.477972 | 0.477972 | 0.522028 | 0.477972 | G | C | GC | IISNP261 GC | NaN | AVBlank2-Nov-10-15 | 0.888767 | 1.000000 | True | 0.000182 | 0.477790 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 739.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP134 | IISNP134 | chr6 | 38781866.0 | C | G | 2045.0 | 2724.0 | 0.428811 | 0.571189 | 4769.0 | 4769.0 | 0.0 | 0.000000 | chr6_38781300_38782411 | 567.0 | 0.428811 | 0.571189 | 0.428811 | 0.428811 | G | C | GC | IISNP134 GC | NaN | AVBlank2-Nov-10-15 | 0.587217 | 1.000000 | True | 0.000182 | 0.428629 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 740.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP144 | IISNP144 | chr6 | 41773576.0 | G | C | 872.0 | 9634.0 | 0.083000 | 0.917000 | 10506.0 | 10515.0 | 9.0 | 0.000856 | chr6_41773010_41774136 | 567.0 | 0.083000 | 0.916215 | 0.082929 | 0.082929 | C | G | CG | IISNP144 CG | NaN | AVBlank2-Nov-10-15 | 1.294734 | 0.999144 | True | 0.000187 | 0.082813 | Recipient Homo |
| AVBlank2-Nov-10-15 | 741.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP263 | IISNP263 | chr6 | 46107752.0 | C | G | 14853.0 | 37.0 | 0.997515 | 0.002485 | 14890.0 | 14895.0 | 5.0 | 0.000336 | chr6_46107197_46108304 | 556.0 | 0.002485 | 0.002484 | 0.997180 | 0.002484 | C | G | CG | IISNP263 CG | NaN | AVBlank2-Nov-10-15 | 1.834052 | 0.999664 | True | 0.000187 | 0.002298 | Recipient Homo |
| AVBlank2-Nov-10-15 | 742.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP143 | IISNP143 | chr6 | 52617731.0 | C | G | 2202.0 | 1896.0 | 0.537335 | 0.462665 | 4098.0 | 4098.0 | 0.0 | 0.000000 | chr6_52617161_52618275 | 571.0 | 0.462665 | 0.462665 | 0.537335 | 0.462665 | C | G | CG | IISNP143 CG | NaN | AVBlank2-Nov-10-15 | 0.504595 | 1.000000 | True | 0.000187 | 0.462478 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 743.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP56 | IISNP56 | chr6 | 55155704.0 | C | A | 34.0 | 10933.0 | 0.003100 | 0.996900 | 10967.0 | 10967.0 | 0.0 | 0.000000 | chr6_55155134_55156239 | 571.0 | 0.003100 | 0.996900 | 0.003100 | 0.003100 | A | C | AC | IISNP56 AC | NaN | AVBlank2-Nov-10-15 | 1.350389 | 1.000000 | True | 0.000181 | 0.002919 | Recipient Homo |
| AVBlank2-Nov-10-15 | 744.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP246 | IISNP246 | chr6 | 56482801.0 | C | G | 17804.0 | 5.0 | 0.999719 | 0.000281 | 17809.0 | 17811.0 | 2.0 | 0.000112 | chr6_56482232_56483352 | 570.0 | 0.000281 | 0.000281 | 0.999607 | 0.000281 | C | G | CG | IISNP246 CG | NaN | AVBlank2-Nov-10-15 | 2.193105 | 0.999888 | True | 0.000187 | 0.000094 | Recipient Homo |
| AVBlank2-Nov-10-15 | 745.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP237 | IISNP237 | chr6 | 74073531.0 | C | G | 6353.0 | 2.0 | 0.999685 | 0.000315 | 6355.0 | 6361.0 | 6.0 | 0.000943 | chr6_74072980_74074097 | 552.0 | 0.000315 | 0.000314 | 0.998742 | 0.000314 | C | G | CG | IISNP237 CG | NaN | AVBlank2-Nov-10-15 | 0.783243 | 0.999057 | True | 0.000187 | 0.000128 | Recipient Homo |
| AVBlank2-Nov-10-15 | 746.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP202 | IISNP202 | chr6 | 76660551.0 | G | C | 13352.0 | 4.0 | 0.999701 | 0.000299 | 13356.0 | 13356.0 | 0.0 | 0.000000 | chr6_76659989_76661118 | 563.0 | 0.000299 | 0.000299 | 0.999701 | 0.000299 | G | C | GC | IISNP202 GC | NaN | AVBlank2-Nov-10-15 | 1.644552 | 1.000000 | True | 0.000182 | 0.000117 | Recipient Homo |
| AVBlank2-Nov-10-15 | 747.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP36 | IISNP36 | chr6 | 120560694.0 | T | A | 6.0 | 4146.0 | 0.001445 | 0.998555 | 4152.0 | 4154.0 | 2.0 | 0.000481 | chr6_120560128_120561231 | 567.0 | 0.001445 | 0.998074 | 0.001444 | 0.001444 | A | T | AT | IISNP36 AT | NaN | AVBlank2-Nov-10-15 | 0.511491 | 0.999519 | True | 0.000350 | 0.001095 | Recipient Homo |
| AVBlank2-Nov-10-15 | 748.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP34 | IISNP34 | chr6 | 123894978.0 | C | A | 0.0 | 785.0 | 0.000000 | 1.000000 | 785.0 | 785.0 | 0.0 | 0.000000 | chr6_123894407_123895512 | 572.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | A | C | AC | IISNP34 AC | NaN | AVBlank2-Nov-10-15 | 0.096659 | 1.000000 | False | NaN | NaN | NaN |
| AVBlank2-Nov-10-15 | 749.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP164 | IISNP164 | chr6 | 126278230.0 | G | C | 11355.0 | 13.0 | 0.998856 | 0.001144 | 11368.0 | 11371.0 | 3.0 | 0.000264 | chr6_126277677_126278784 | 554.0 | 0.001144 | 0.001143 | 0.998593 | 0.001143 | G | C | GC | IISNP164 GC | NaN | AVBlank2-Nov-10-15 | 1.400135 | 0.999736 | True | 0.000182 | 0.000962 | Recipient Homo |
| AVBlank2-Nov-10-15 | 750.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP54 | IISNP54 | chr6 | 127463376.0 | C | A | 1379.0 | 1063.0 | 0.564701 | 0.435299 | 2442.0 | 2442.0 | 0.0 | 0.000000 | chr6_127462805_127463913 | 572.0 | 0.435299 | 0.435299 | 0.564701 | 0.435299 | C | A | CA | IISNP54 CA | NaN | AVBlank2-Nov-10-15 | 0.300689 | 1.000000 | True | 0.000474 | 0.434824 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 751.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP247 | IISNP247 | chr6 | 138413333.0 | G | C | 5953.0 | 6431.0 | 0.480701 | 0.519299 | 12384.0 | 12411.0 | 27.0 | 0.002175 | chr6_138412785_138413907 | 549.0 | 0.480701 | 0.518169 | 0.479655 | 0.479655 | C | G | CG | IISNP247 CG | NaN | AVBlank2-Nov-10-15 | 1.528192 | 0.997825 | True | 0.000187 | 0.480514 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 752.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP50 | IISNP50 | chr6 | 148761456.0 | G | C | 11051.0 | 7268.0 | 0.603253 | 0.396747 | 18319.0 | 18331.0 | 12.0 | 0.000655 | chr6_148760890_148761999 | 567.0 | 0.396747 | 0.396487 | 0.602859 | 0.396487 | G | C | GC | IISNP50 GC | NaN | AVBlank2-Nov-10-15 | 2.257134 | 0.999345 | True | 0.000182 | 0.396565 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 753.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP172 | IISNP172 | chr6 | 150209717.0 | C | G | 293.0 | 241.0 | 0.548689 | 0.451311 | 534.0 | 534.0 | 0.0 | 0.000000 | chr6_150209159_150210278 | 559.0 | 0.451311 | 0.451311 | 0.548689 | 0.451311 | C | G | CG | IISNP172 CG | NaN | AVBlank2-Nov-10-15 | 0.065753 | 1.000000 | False | NaN | NaN | NaN |
| AVBlank2-Nov-10-15 | 754.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP45 | IISNP45 | chr6 | 152697706.0 | C | T | 5591.0 | 4933.0 | 0.531262 | 0.468738 | 10524.0 | 10524.0 | 0.0 | 0.000000 | chr6_152697130_152698240 | 577.0 | 0.468738 | 0.468738 | 0.531262 | 0.468738 | C | T | CT | IISNP45 CT | NaN | AVBlank2-Nov-10-15 | 1.295842 | 1.000000 | True | 0.000984 | 0.467754 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 755.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP122 | IISNP122 | chr6 | 170862300.0 | G | C | 7025.0 | 4267.0 | 0.622122 | 0.377878 | 11292.0 | 11296.0 | 4.0 | 0.000354 | chr6_170861722_170862832 | 579.0 | 0.377878 | 0.377744 | 0.621902 | 0.377744 | G | C | GC | IISNP122 GC | NaN | AVBlank2-Nov-10-15 | 1.390900 | 0.999646 | True | 0.000182 | 0.377696 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 756.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP267 | IISNP267 | chr7 | 4026944.0 | C | G | 9141.0 | 39.0 | 0.995752 | 0.004248 | 9180.0 | 9228.0 | 48.0 | 0.005202 | chr7_4026399_4027521 | 546.0 | 0.004248 | 0.004226 | 0.990572 | 0.004226 | C | G | CG | IISNP267 CG | NaN | AVBlank2-Nov-10-15 | 1.136263 | 0.994798 | True | 0.000187 | 0.004061 | Recipient Homo |
| AVBlank2-Nov-10-15 | 547.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP131 | IISNP131 | chr1 | 247752019.0 | G | C | 3678.0 | 3.0 | 0.999185 | 0.000815 | 3681.0 | 3682.0 | 1.0 | 0.000272 | chr1_247751483_247752601 | 537.0 | 0.000815 | 0.000815 | 0.998914 | 0.000815 | G | C | GC | IISNP131 GC | NaN | AVBlank2-Nov-10-15 | 0.453372 | 0.999728 | True | 0.000182 | 0.000633 | Recipient Homo |
| AVBlank2-Nov-10-15 | 548.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP121 | IISNP121 | chr10 | 5136651.0 | C | G | 3361.0 | 3800.0 | 0.469348 | 0.530652 | 7161.0 | 7162.0 | 1.0 | 0.000140 | chr10_5136059_5137186 | 593.0 | 0.469348 | 0.530578 | 0.469282 | 0.469282 | G | C | GC | IISNP121 GC | NaN | AVBlank2-Nov-10-15 | 0.881872 | 0.999860 | True | 0.000182 | 0.469166 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 549.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP244 | IISNP244 | chr10 | 21414892.0 | C | G | 8435.0 | 3.0 | 0.999644 | 0.000356 | 8438.0 | 8441.0 | 3.0 | 0.000355 | chr10_21414322_21415442 | 571.0 | 0.000356 | 0.000355 | 0.999289 | 0.000355 | C | G | CG | IISNP244 CG | NaN | AVBlank2-Nov-10-15 | 1.039358 | 0.999645 | True | 0.000187 | 0.000169 | Recipient Homo |
| AVBlank2-Nov-10-15 | 550.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP114 | IISNP114 | chr10 | 24873369.0 | C | G | 2591.0 | 2917.0 | 0.470407 | 0.529593 | 5508.0 | 5728.0 | 220.0 | 0.038408 | chr10_24872787_24873906 | 583.0 | 0.470407 | 0.509253 | 0.452339 | 0.452339 | G | C | GC | IISNP114 GC | NaN | AVBlank2-Nov-10-15 | 0.705301 | 0.961592 | True | 0.000182 | 0.470225 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 551.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP178 | IISNP178 | chr10 | 25701341.0 | C | G | 2.0 | 3895.0 | 0.000513 | 0.999487 | 3897.0 | 3897.0 | 0.0 | 0.000000 | chr10_25700758_25701869 | 584.0 | 0.000513 | 0.999487 | 0.000513 | 0.000513 | G | C | GC | IISNP178 GC | NaN | AVBlank2-Nov-10-15 | 0.479846 | 1.000000 | True | 0.000182 | 0.000331 | Recipient Homo |
| AVBlank2-Nov-10-15 | 552.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP181 | IISNP181 | chr10 | 38344700.0 | C | G | 5960.0 | 222.0 | 0.964089 | 0.035911 | 6182.0 | 6198.0 | 16.0 | 0.002581 | chr10_38344113_38345242 | 588.0 | 0.035911 | 0.035818 | 0.961601 | 0.035818 | C | G | CG | IISNP181 CG | NaN | AVBlank2-Nov-10-15 | 0.763173 | 0.997419 | True | 0.000187 | 0.035724 | Recipient Homo |
| AVBlank2-Nov-10-15 | 553.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP215 | IISNP215 | chr10 | 69934258.0 | C | G | 2879.0 | 2771.0 | 0.509558 | 0.490442 | 5650.0 | 5655.0 | 5.0 | 0.000884 | chr10_69933675_69934782 | 584.0 | 0.490442 | 0.490009 | 0.509107 | 0.490009 | C | G | CG | IISNP215 CG | NaN | AVBlank2-Nov-10-15 | 0.696312 | 0.999116 | True | 0.000187 | 0.490256 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 554.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP165 | IISNP165 | chr10 | 90342837.0 | C | G | 3640.0 | 2446.0 | 0.598094 | 0.401906 | 6086.0 | 6086.0 | 0.0 | 0.000000 | chr10_90342263_90343376 | 575.0 | 0.401906 | 0.401906 | 0.598094 | 0.401906 | C | G | CG | IISNP165 CG | NaN | AVBlank2-Nov-10-15 | 0.749382 | 1.000000 | True | 0.000187 | 0.401719 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 555.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP35 | IISNP35 | chr10 | 97172595.0 | T | C | 6102.0 | 6577.0 | 0.481268 | 0.518732 | 12679.0 | 12679.0 | 0.0 | 0.000000 | chr10_97172060_97173166 | 536.0 | 0.481268 | 0.518732 | 0.481268 | 0.481268 | C | T | CT | IISNP35 CT | NaN | AVBlank2-Nov-10-15 | 1.561192 | 1.000000 | True | 0.000984 | 0.480284 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 556.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP154 | IISNP154 | chr10 | 99439541.0 | G | C | 8472.0 | 6.0 | 0.999292 | 0.000708 | 8478.0 | 8480.0 | 2.0 | 0.000236 | chr10_99438974_99440086 | 568.0 | 0.000708 | 0.000708 | 0.999057 | 0.000708 | G | C | GC | IISNP154 GC | NaN | AVBlank2-Nov-10-15 | 1.044160 | 0.999764 | True | 0.000182 | 0.000526 | Recipient Homo |
| AVBlank2-Nov-10-15 | 557.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP256 | IISNP256 | chr10 | 114053546.0 | C | G | 0.0 | 623.0 | 0.000000 | 1.000000 | 623.0 | 623.0 | 0.0 | 0.000000 | chr10_114052989_114054096 | 558.0 | 0.000000 | 1.000000 | 0.000000 | 0.000000 | G | C | GC | IISNP256 GC | NaN | AVBlank2-Nov-10-15 | 0.076711 | 1.000000 | False | NaN | NaN | NaN |
| AVBlank2-Nov-10-15 | 558.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP189 | IISNP189 | chr10 | 126714714.0 | G | C | 3760.0 | 3.0 | 0.999203 | 0.000797 | 3763.0 | 3765.0 | 2.0 | 0.000531 | chr10_126714134_126715248 | 581.0 | 0.000797 | 0.000797 | 0.998672 | 0.000797 | G | C | GC | IISNP189 GC | NaN | AVBlank2-Nov-10-15 | 0.463592 | 0.999469 | True | 0.000182 | 0.000615 | Recipient Homo |
| AVBlank2-Nov-10-15 | 559.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP204 | IISNP204 | chr10 | 128019025.0 | C | G | 12652.0 | 7194.0 | 0.637509 | 0.362491 | 19846.0 | 19849.0 | 3.0 | 0.000151 | chr10_128018457_128019577 | 569.0 | 0.362491 | 0.362436 | 0.637412 | 0.362436 | C | G | CG | IISNP204 CG | NaN | AVBlank2-Nov-10-15 | 2.444049 | 0.999849 | True | 0.000187 | 0.362304 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 560.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP110 | IISNP110 | chr10 | 129899778.0 | G | C | 7941.0 | 1232.0 | 0.865693 | 0.134307 | 9173.0 | 9174.0 | 1.0 | 0.000109 | chr10_129899187_129900315 | 592.0 | 0.134307 | 0.134293 | 0.865598 | 0.134293 | G | C | GC | IISNP110 GC | NaN | AVBlank2-Nov-10-15 | 1.129614 | 0.999891 | True | 0.000182 | 0.134125 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 561.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP239 | IISNP239 | chr11 | 299411.0 | C | G | 1225.0 | 863.0 | 0.586686 | 0.413314 | 2088.0 | 2088.0 | 0.0 | 0.000000 | chr11_298837_299939 | 575.0 | 0.413314 | 0.413314 | 0.586686 | 0.413314 | C | G | CG | IISNP239 CG | NaN | AVBlank2-Nov-10-15 | 0.257100 | 1.000000 | True | 0.000187 | 0.413127 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 562.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP187 | IISNP187 | chr11 | 4567335.0 | C | G | 8.0 | 8182.0 | 0.000977 | 0.999023 | 8190.0 | 8190.0 | 0.0 | 0.000000 | chr11_4566780_4567909 | 556.0 | 0.000977 | 0.999023 | 0.000977 | 0.000977 | G | C | GC | IISNP187 GC | NaN | AVBlank2-Nov-10-15 | 1.008452 | 1.000000 | True | 0.000182 | 0.000795 | Recipient Homo |
| AVBlank2-Nov-10-15 | 563.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP25 | IISNP25 | chr11 | 5098714.0 | C | T | 5092.0 | 10.0 | 0.998040 | 0.001960 | 5102.0 | 5103.0 | 1.0 | 0.000196 | chr11_5098168_5099267 | 547.0 | 0.001960 | 0.001960 | 0.997844 | 0.001960 | C | T | CT | IISNP25 CT | NaN | AVBlank2-Nov-10-15 | 0.628343 | 0.999804 | True | 0.000984 | 0.000976 | Recipient Homo |
| AVBlank2-Nov-10-15 | 564.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP24 | IISNP24 | chr11 | 5099393.0 | T | A | 17359.0 | 6.0 | 0.999654 | 0.000346 | 17365.0 | 17374.0 | 9.0 | 0.000518 | chr11_5098828_5099937 | 566.0 | 0.000346 | 0.000345 | 0.999137 | 0.000345 | T | A | TA | IISNP24 TA | NaN | AVBlank2-Nov-10-15 | 2.139297 | 0.999482 | True | 0.000269 | 0.000077 | Recipient Homo |
| AVBlank2-Nov-10-15 | 565.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP38 | IISNP38 | chr11 | 5709028.0 | C | T | 8611.0 | 7628.0 | 0.530267 | 0.469733 | 16239.0 | 16239.0 | 0.0 | 0.000000 | chr11_5708471_5709577 | 558.0 | 0.469733 | 0.469733 | 0.530267 | 0.469733 | C | T | CT | IISNP38 CT | NaN | AVBlank2-Nov-10-15 | 1.999542 | 1.000000 | True | 0.000984 | 0.468749 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 566.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP206 | IISNP206 | chr11 | 8947283.0 | G | C | 8.0 | 12119.0 | 0.000660 | 0.999340 | 12127.0 | 12127.0 | 0.0 | 0.000000 | chr11_8946706_8947820 | 578.0 | 0.000660 | 0.999340 | 0.000660 | 0.000660 | C | G | CG | IISNP206 CG | NaN | AVBlank2-Nov-10-15 | 1.493223 | 1.000000 | True | 0.000187 | 0.000473 | Recipient Homo |
| AVBlank2-Nov-10-15 | 567.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP84 | IISNP84 | chr11 | 11096221.0 | C | T | 11570.0 | 22.0 | 0.998102 | 0.001898 | 11592.0 | 11595.0 | 3.0 | 0.000259 | chr11_11095660_11096769 | 562.0 | 0.001898 | 0.001897 | 0.997844 | 0.001897 | C | T | CT | IISNP84 CT | NaN | AVBlank2-Nov-10-15 | 1.427716 | 0.999741 | True | 0.000984 | 0.000914 | Recipient Homo |
| AVBlank2-Nov-10-15 | 568.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP109 | IISNP109 | chr11 | 11292700.0 | G | C | 11586.0 | 0.0 | 1.000000 | 0.000000 | 11586.0 | 11589.0 | 3.0 | 0.000259 | chr11_11292148_11293259 | 553.0 | 0.000000 | 0.000000 | 0.999741 | 0.000000 | G | C | GC | IISNP109 GC | NaN | AVBlank2-Nov-10-15 | 1.426978 | 0.999741 | True | 0.000182 | -0.000182 | Recipient Homo |
| AVBlank2-Nov-10-15 | 569.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP107 | IISNP107 | chr11 | 17519742.0 | C | G | 639.0 | 807.0 | 0.441909 | 0.558091 | 1446.0 | 1447.0 | 1.0 | 0.000691 | chr11_17519170_17520279 | 573.0 | 0.441909 | 0.557706 | 0.441603 | 0.441603 | G | C | GC | IISNP107 GC | NaN | AVBlank2-Nov-10-15 | 0.178172 | 0.999309 | True | 0.000182 | 0.441727 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 655.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP281 | IISNP281 | chr19 | 56423074.0 | C | G | 10219.0 | 18.0 | 0.998242 | 0.001758 | 10237.0 | 10237.0 | 0.0 | 0.000000 | chr19_56422500_56423625 | 575.0 | 0.001758 | 0.001758 | 0.998242 | 0.001758 | C | G | CG | IISNP281 CG | NaN | AVBlank2-Nov-10-15 | 1.260503 | 1.000000 | True | 0.000187 | 0.001571 | Recipient Homo |
| AVBlank2-Nov-10-15 | 656.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP94 | IISNP94 | chr19 | 57085769.0 | G | C | 17665.0 | 2.0 | 0.999887 | 0.000113 | 17667.0 | 17671.0 | 4.0 | 0.000226 | chr19_57085220_57086327 | 550.0 | 0.000113 | 0.000113 | 0.999660 | 0.000113 | G | C | GC | IISNP94 GC | NaN | AVBlank2-Nov-10-15 | 2.175867 | 0.999774 | True | 0.000182 | -0.000069 | Recipient Homo |
| AVBlank2-Nov-10-15 | 657.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP248 | IISNP248 | chr19 | 57838018.0 | C | G | 4.0 | 3500.0 | 0.001142 | 0.998858 | 3504.0 | 3507.0 | 3.0 | 0.000855 | chr19_57837471_57838600 | 548.0 | 0.001142 | 0.998004 | 0.001141 | 0.001141 | G | C | GC | IISNP248 GC | NaN | AVBlank2-Nov-10-15 | 0.431824 | 0.999145 | True | 0.000182 | 0.000960 | Recipient Homo |
| AVBlank2-Nov-10-15 | 658.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP233 | IISNP233 | chr2 | 3469463.0 | G | C | 15633.0 | 34.0 | 0.997830 | 0.002170 | 15667.0 | 15674.0 | 7.0 | 0.000447 | chr2_3468916_3470030 | 548.0 | 0.002170 | 0.002169 | 0.997384 | 0.002169 | G | C | GC | IISNP233 GC | NaN | AVBlank2-Nov-10-15 | 1.929972 | 0.999553 | True | 0.000182 | 0.001988 | Recipient Homo |
| AVBlank2-Nov-10-15 | 659.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP28 | IISNP28 | chr2 | 10085722.0 | G | A | 7279.0 | 16.0 | 0.997807 | 0.002193 | 7295.0 | 7295.0 | 0.0 | 0.000000 | chr2_10085153_10086253 | 570.0 | 0.002193 | 0.002193 | 0.997807 | 0.002193 | G | A | GA | IISNP28 GA | NaN | AVBlank2-Nov-10-15 | 0.898248 | 1.000000 | True | 0.000987 | 0.001206 | Recipient Homo |
| AVBlank2-Nov-10-15 | 660.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP175 | IISNP175 | chr2 | 27324724.0 | G | C | 0.0 | 6956.0 | 0.000000 | 1.000000 | 6956.0 | 6958.0 | 2.0 | 0.000287 | chr2_27324182_27325292 | 543.0 | 0.000000 | 0.999713 | 0.000000 | 0.000000 | C | G | CG | IISNP175 CG | NaN | AVBlank2-Nov-10-15 | 0.856753 | 0.999713 | True | 0.000187 | -0.000187 | Recipient Homo |
| AVBlank2-Nov-10-15 | 661.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP266 | IISNP266 | chr2 | 28824793.0 | C | G | 4.0 | 2.0 | 0.666667 | 0.333333 | 6.0 | 6.0 | 0.0 | 0.000000 | chr2_28824241_28825363 | 553.0 | 0.333333 | 0.333333 | 0.666667 | 0.333333 | C | G | CG | IISNP266 CG | NaN | AVBlank2-Nov-10-15 | 0.000739 | 1.000000 | False | NaN | NaN | NaN |
| AVBlank2-Nov-10-15 | 662.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP135 | IISNP135 | chr2 | 29416366.0 | G | C | 5263.0 | 4317.0 | 0.549374 | 0.450626 | 9580.0 | 9581.0 | 1.0 | 0.000104 | chr2_29415814_29416943 | 553.0 | 0.450626 | 0.450579 | 0.549316 | 0.450579 | G | C | GC | IISNP135 GC | NaN | AVBlank2-Nov-10-15 | 1.179728 | 0.999896 | True | 0.000182 | 0.450444 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 663.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP148 | IISNP148 | chr2 | 75113789.0 | C | G | 4538.0 | 4730.0 | 0.489642 | 0.510358 | 9268.0 | 9272.0 | 4.0 | 0.000431 | chr2_75113219_75114341 | 571.0 | 0.489642 | 0.510138 | 0.489431 | 0.489431 | G | C | GC | IISNP148 GC | NaN | AVBlank2-Nov-10-15 | 1.141681 | 0.999569 | True | 0.000182 | 0.489460 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 757.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP193 | IISNP193 | chr7 | 12269417.0 | C | G | 2227.0 | 4.0 | 0.998207 | 0.001793 | 2231.0 | 2231.0 | 0.0 | 0.000000 | chr7_12268849_12269978 | 569.0 | 0.001793 | 0.001793 | 0.998207 | 0.001793 | C | G | CG | IISNP193 CG | NaN | AVBlank2-Nov-10-15 | 0.274708 | 1.000000 | True | 0.000187 | 0.001606 | Recipient Homo |
| AVBlank2-Nov-10-15 | 758.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP22 | IISNP22 | chr7 | 13894276.0 | A | G | 9.0 | 10227.0 | 0.000879 | 0.999121 | 10236.0 | 10238.0 | 2.0 | 0.000195 | chr7_13893713_13894820 | 564.0 | 0.000879 | 0.998926 | 0.000879 | 0.000879 | G | A | GA | IISNP22 GA | NaN | AVBlank2-Nov-10-15 | 1.260626 | 0.999805 | True | 0.000987 | -0.000108 | Recipient Homo |
| AVBlank2-Nov-10-15 | 759.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP203 | IISNP203 | chr7 | 20180717.0 | C | G | 2.0 | 13616.0 | 0.000147 | 0.999853 | 13618.0 | 13622.0 | 4.0 | 0.000294 | chr7_20180151_20181280 | 567.0 | 0.000147 | 0.999560 | 0.000147 | 0.000147 | G | C | GC | IISNP203 GC | NaN | AVBlank2-Nov-10-15 | 1.677305 | 0.999706 | True | 0.000182 | -0.000035 | Recipient Homo |
| AVBlank2-Nov-10-15 | 760.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP185 | IISNP185 | chr7 | 25194665.0 | G | C | 7505.0 | 2.0 | 0.999734 | 0.000266 | 7507.0 | 7511.0 | 4.0 | 0.000533 | chr7_25194102_25195226 | 564.0 | 0.000266 | 0.000266 | 0.999201 | 0.000266 | G | C | GC | IISNP185 GC | NaN | AVBlank2-Nov-10-15 | 0.924845 | 0.999467 | True | 0.000182 | 0.000084 | Recipient Homo |
| AVBlank2-Nov-10-15 | 761.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP93 | IISNP93 | chr7 | 47925331.0 | C | G | 7889.0 | 0.0 | 1.000000 | 0.000000 | 7889.0 | 7912.0 | 23.0 | 0.002907 | chr7_47924777_47925902 | 555.0 | 0.000000 | 0.000000 | 0.997093 | 0.000000 | C | G | CG | IISNP93 CG | NaN | AVBlank2-Nov-10-15 | 0.974221 | 0.997093 | True | 0.000187 | -0.000187 | Recipient Homo |
| AVBlank2-Nov-10-15 | 762.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP112 | IISNP112 | chr7 | 130021488.0 | G | C | 2952.0 | 3045.0 | 0.492246 | 0.507754 | 5997.0 | 6006.0 | 9.0 | 0.001499 | chr7_130020932_130022055 | 557.0 | 0.492246 | 0.506993 | 0.491508 | 0.491508 | C | G | CG | IISNP112 CG | NaN | AVBlank2-Nov-10-15 | 0.739531 | 0.998501 | True | 0.000187 | 0.492059 | Recipient Hetero |
| AVBlank2-Nov-10-15 | 763.0 | 288.0 | CYC10Nov2015Pool3 | aIISNP166 | IISNP166 | chr7 | 138740037.0 | G | C | 12231.0 | 15.0 | 0.998775 | 0.001225 | 12246.0 | 12246.0 | 0.0 | 0.000000 | chr7_138739465_138740586 | 573.0 | 0.001225 | 0.001225 | 0.998775 | 0.001225 | G | C | GC | IISNP166 GC | NaN | AVBlank2-Nov-10-15 | 1.507875 | 1.000000 | True | 0.000182 | 0.001043 | Recipient Homo |
46847 rows × 35 columns
# help(pd.DataFrame.iplot)
SNP_cov
| Genome_location | Ref_start_pos | Ref_end_pos | rsID | SNP_pos_in_ref | Ref | Alt | amp_length | SNP_pos | SNP_cov_end_bound | SNP_cov_type | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP_ID | |||||||||||
| IISNP1 | chr11_115206646_115207761 | 501 | 616 | rs10488710 | chr11_115206646_115207761:531 | C | G | 116 | 31 | 35 | False |
| IISNP10 | chr4_46329095_46330254 | 501 | 660 | rs279844 | chr4_46329095_46330254:561 | A | T | 160 | 61 | 79 | False |
| IISNP100 | chr19_10599851_10600965 | 501 | 615 | rs1048290 | chr19_10599851_10600965:592 | G | C | 115 | 92 | 34 | False |
| IISNP101 | chr17_33998221_33999330 | 501 | 610 | rs1049379 | chr17_33998221_33999330:582 | G | C | 110 | 82 | 29 | True |
| IISNP102 | chr1_154744236_154745348 | 501 | 613 | rs1051614 | chr1_154744236_154745348:572 | C | G | 113 | 72 | 32 | True |
| IISNP103 | chr2_118574685_118575803 | 501 | 619 | rs1052637 | chr2_118574685_118575803:531 | C | G | 119 | 31 | 38 | False |
| IISNP104 | chr1_236381266_236382387 | 501 | 622 | rs1055851 | chr1_236381266_236382387:560 | G | C | 122 | 60 | 41 | True |
| IISNP105 | chr20_24939035_24940159 | 501 | 625 | rs1056033 | chr20_24939035_24940159:556 | G | C | 125 | 56 | 44 | True |
| IISNP106 | chr5_145441622_145442735 | 501 | 614 | rs1056149 | chr5_145441622_145442735:582 | G | C | 114 | 82 | 33 | True |
| IISNP107 | chr11_17519170_17520279 | 501 | 610 | rs1064074 | chr11_17519170_17520279:573 | C | G | 110 | 73 | 29 | True |
| IISNP108 | chr2_85769181_85770292 | 501 | 612 | rs1078004 | chr2_85769181_85770292:531 | C | G | 112 | 31 | 31 | False |
| IISNP109 | chr11_11292148_11293259 | 501 | 612 | rs10831567 | chr11_11292148_11293259:553 | G | C | 112 | 53 | 31 | True |
| IISNP11 | chr4_169663057_169664186 | 501 | 630 | rs6811238 | chr4_169663057_169664186:559 | T | G | 130 | 59 | 49 | True |
| IISNP110 | chr10_129899187_129900315 | 501 | 629 | rs11106 | chr10_129899187_129900315:592 | G | C | 129 | 92 | 48 | False |
| IISNP111 | chr1_75096893_75098000 | 501 | 608 | rs11210490 | chr1_75096893_75098000:534 | G | C | 108 | 34 | 27 | True |
| IISNP112 | chr7_130020932_130022055 | 501 | 624 | rs1126899 | chr7_130020932_130022055:557 | G | C | 124 | 57 | 43 | True |
| IISNP113 | chr15_78632267_78633388 | 501 | 622 | rs1127472 | chr15_78632267_78633388:564 | C | G | 122 | 64 | 41 | True |
| IISNP114 | chr10_24872787_24873906 | 501 | 620 | rs1127893 | chr10_24872787_24873906:583 | C | G | 120 | 83 | 39 | False |
| IISNP115 | chr5_176862952_176864062 | 501 | 611 | rs1130857 | chr5_176862952_176864062:568 | G | C | 111 | 68 | 30 | True |
| IISNP116 | chr4_88415067_88416171 | 501 | 605 | rs1049544 | chr4_88415067_88416171:570 | G | C | 105 | 70 | 24 | True |
| IISNP117 | chr19_44302506_44303626 | 501 | 621 | rs11547806 | chr19_44302506_44303626:561 | C | G | 121 | 61 | 40 | True |
| IISNP118 | chr12_121416065_121417194 | 501 | 630 | rs1169289 | chr12_121416065_121417194:558 | C | G | 130 | 58 | 49 | True |
| IISNP119 | chr9_2717972_2719101 | 501 | 630 | rs12237048 | chr9_2717972_2719101:563 | C | G | 130 | 63 | 49 | True |
| IISNP12 | chr16_78016473_78017602 | 501 | 630 | rs430046 | chr16_78016473_78017602:579 | C | T | 130 | 79 | 49 | True |
| IISNP120 | chr4_129042633_129043755 | 501 | 623 | rs12508837 | chr4_129042633_129043755:572 | C | G | 123 | 72 | 42 | True |
| IISNP121 | chr10_5136059_5137186 | 501 | 628 | rs12529 | chr10_5136059_5137186:593 | C | G | 128 | 93 | 47 | False |
| IISNP122 | chr6_170861722_170862832 | 501 | 611 | rs12717 | chr6_170861722_170862832:579 | G | C | 111 | 79 | 30 | True |
| IISNP123 | chr5_161118544_161119671 | 501 | 628 | rs13184586 | chr5_161118544_161119671:582 | C | G | 128 | 82 | 47 | True |
| IISNP124 | chr9_129455060_129456167 | 501 | 608 | rs13295990 | chr9_129455060_129456167:528 | G | C | 108 | 28 | 27 | True |
| IISNP125 | chr13_25008849_25009978 | 501 | 630 | rs13428 | chr13_25008849_25009978:593 | C | G | 130 | 93 | 49 | False |
| IISNP126 | chr19_48620482_48621601 | 501 | 620 | rs13436 | chr19_48620482_48621601:555 | C | G | 120 | 55 | 39 | True |
| IISNP127 | chr11_57798787_57799916 | 501 | 630 | rs1374570 | chr11_57798787_57799916:585 | G | C | 130 | 85 | 49 | False |
| IISNP128 | chr3_16305112_16306238 | 501 | 627 | rs14080 | chr3_16305112_16306238:563 | C | G | 127 | 63 | 46 | True |
| IISNP129 | chr9_125315189_125316306 | 501 | 618 | rs1411271 | chr9_125315189_125316306:590 | G | C | 118 | 90 | 37 | False |
| IISNP13 | chr19_39559236_39560337 | 501 | 602 | rs576261 | chr19_39559236_39560337:572 | A | C | 102 | 72 | 21 | True |
| IISNP130 | chr19_618466_619585 | 501 | 620 | rs14155 | chr19_618466_619585:556 | G | C | 120 | 56 | 39 | True |
| IISNP131 | chr1_247751483_247752601 | 501 | 619 | rs1151687 | chr1_247751483_247752601:537 | G | C | 119 | 37 | 38 | False |
| IISNP132 | chr12_49255241_49256366 | 501 | 626 | rs1565933 | chr12_49255241_49256366:558 | G | C | 126 | 58 | 45 | True |
| IISNP133 | chr12_14656198_14657327 | 501 | 630 | rs1600 | chr12_14656198_14657327:571 | G | C | 130 | 71 | 49 | True |
| IISNP134 | chr6_38781300_38782411 | 501 | 612 | rs1678690 | chr6_38781300_38782411:567 | C | G | 112 | 67 | 31 | True |
| IISNP135 | chr2_29415814_29416943 | 501 | 630 | rs1881421 | chr2_29415814_29416943:553 | G | C | 130 | 53 | 49 | True |
| IISNP136 | chr19_44981323_44982437 | 501 | 615 | rs1897820 | chr19_44981323_44982437:561 | C | G | 115 | 61 | 34 | True |
| IISNP137 | chr15_40655304_40656417 | 501 | 614 | rs1898882 | chr15_40655304_40656417:570 | G | C | 114 | 70 | 33 | True |
| IISNP138 | chr21_40669882_40670990 | 501 | 609 | rs2056844 | chr21_40669882_40670990:579 | G | C | 109 | 79 | 28 | True |
| IISNP139 | chr8_23058791_23059898 | 501 | 608 | rs20575 | chr8_23058791_23059898:534 | C | G | 108 | 34 | 27 | True |
| IISNP14 | chr8_28410486_28411610 | 501 | 625 | rs10092491 | chr8_28410486_28411610:587 | T | C | 125 | 87 | 44 | False |
| IISNP140 | chr21_47849924_47851051 | 501 | 628 | rs2070426 | chr21_47849924_47851051:561 | G | C | 128 | 61 | 47 | True |
| IISNP141 | chr6_33272320_33273427 | 501 | 608 | rs2071888 | chr6_33272320_33273427:536 | G | C | 108 | 36 | 27 | True |
| IISNP142 | chr12_31249317_31250444 | 501 | 628 | rs2075322 | chr12_31249317_31250444:545 | C | G | 128 | 45 | 47 | False |
| IISNP143 | chr6_52617161_52618275 | 501 | 615 | rs2180314 | chr6_52617161_52618275:571 | C | G | 115 | 71 | 34 | True |
| IISNP144 | chr6_41773010_41774136 | 501 | 627 | rs2185798 | chr6_41773010_41774136:567 | G | C | 127 | 67 | 46 | True |
| IISNP145 | chr12_5020815_5021938 | 501 | 624 | rs2227910 | chr12_5020815_5021938:534 | G | C | 124 | 34 | 43 | False |
| IISNP146 | chr9_137711436_137712561 | 501 | 626 | rs2228560 | chr9_137711436_137712561:562 | G | C | 126 | 62 | 45 | True |
| IISNP147 | chr2_215644872_215645995 | 501 | 624 | rs2229571 | chr2_215644872_215645995:593 | C | G | 124 | 93 | 43 | False |
| IISNP148 | chr2_75113219_75114341 | 501 | 623 | rs2229627 | chr2_75113219_75114341:571 | C | G | 123 | 71 | 42 | True |
| IISNP149 | chr3_129285829_129286957 | 501 | 629 | rs2245285 | chr3_129285829_129286957:585 | G | C | 129 | 85 | 48 | False |
| IISNP15 | chr16_5868144_5869263 | 501 | 620 | rs2342747 | chr16_5868144_5869263:557 | A | G | 120 | 57 | 39 | True |
| IISNP150 | chr21_44293171_44294278 | 501 | 608 | rs2248490 | chr21_44293171_44294278:574 | C | G | 108 | 74 | 27 | True |
| IISNP151 | chr7_150877678_150878790 | 501 | 613 | rs2253592 | chr7_150877678_150878790:583 | C | G | 113 | 83 | 32 | False |
| IISNP152 | chr1_22216012_22217133 | 501 | 622 | rs2254357 | chr1_22216012_22217133:593 | C | G | 122 | 93 | 41 | False |
| IISNP153 | chr14_58563143_58564270 | 501 | 628 | rs2273442 | chr14_58563143_58564270:552 | G | C | 128 | 52 | 47 | True |
| IISNP154 | chr10_99438974_99440086 | 501 | 613 | rs2275047 | chr10_99438974_99440086:568 | G | C | 113 | 68 | 32 | True |
| IISNP155 | chr12_130940594_130941723 | 501 | 630 | rs2277361 | chr12_130940594_130941723:557 | G | C | 130 | 57 | 49 | True |
| IISNP156 | chr12_56827164_56828284 | 501 | 621 | rs2279665 | chr12_56827164_56828284:531 | C | G | 121 | 31 | 40 | False |
| IISNP157 | chr9_8388794_8389902 | 501 | 609 | rs2279776 | chr9_8388794_8389902:571 | C | G | 109 | 71 | 28 | True |
| IISNP158 | chr22_37963741_37964868 | 501 | 628 | rs2281098 | chr22_37963741_37964868:559 | C | G | 128 | 59 | 47 | True |
| IISNP159 | chr19_10083723_10084832 | 501 | 610 | rs2287813 | chr19_10083723_10084832:570 | C | G | 110 | 70 | 29 | True |
| IISNP16 | chr3_32417091_32418199 | 501 | 609 | rs4364205 | chr3_32417091_32418199:554 | T | G | 109 | 54 | 28 | True |
| IISNP160 | chr17_76448943_76450062 | 501 | 620 | rs2289751 | chr17_76448943_76450062:563 | G | C | 120 | 63 | 39 | True |
| IISNP161 | chr15_22960301_22961425 | 501 | 625 | rs2289818 | chr15_22960301_22961425:568 | G | C | 125 | 68 | 44 | True |
| IISNP162 | chr1_87100813_87101939 | 501 | 627 | rs2292830 | chr1_87100813_87101939:563 | C | G | 127 | 63 | 46 | True |
| IISNP163 | chr8_27667377_27668505 | 501 | 629 | rs2294092 | chr8_27667377_27668505:593 | C | G | 129 | 93 | 48 | False |
| IISNP164 | chr6_126277677_126278784 | 501 | 608 | rs2295005 | chr6_126277677_126278784:554 | G | C | 108 | 54 | 27 | True |
| IISNP165 | chr10_90342263_90343376 | 501 | 614 | rs2296545 | chr10_90342263_90343376:575 | C | G | 114 | 75 | 33 | True |
| IISNP166 | chr7_138739465_138740586 | 501 | 622 | rs2297236 | chr7_138739465_138740586:573 | G | C | 122 | 73 | 41 | True |
| IISNP167 | chr7_156761669_156762794 | 501 | 626 | rs2302443 | chr7_156761669_156762794:556 | G | C | 126 | 56 | 45 | True |
| IISNP168 | chr16_88767192_88768321 | 501 | 630 | rs2306049 | chr16_88767192_88768321:578 | G | C | 130 | 78 | 49 | True |
| IISNP169 | chr22_45821381_45822501 | 501 | 621 | rs1022478 | chr22_45821381_45822501:576 | C | G | 121 | 76 | 40 | True |
| IISNP17 | chr20_15124404_15125523 | 501 | 620 | rs445251 | chr20_15124404_15125523:530 | G | C | 120 | 30 | 39 | False |
| IISNP170 | chr17_15216858_15217965 | 501 | 608 | rs230898 | chr17_15216858_15217965:580 | C | G | 108 | 80 | 27 | True |
| IISNP171 | chr19_36277889_36279010 | 501 | 622 | rs231235 | chr19_36277889_36279010:582 | C | G | 122 | 82 | 41 | True |
| IISNP172 | chr6_150209159_150210278 | 501 | 620 | rs2342767 | chr6_150209159_150210278:559 | C | G | 120 | 59 | 39 | True |
| IISNP173 | chr20_5903313_5904421 | 501 | 609 | rs236152 | chr20_5903313_5904421:536 | C | G | 109 | 36 | 28 | True |
| IISNP174 | chr3_48460757_48461883 | 501 | 627 | rs2362450 | chr3_48460757_48461883:557 | C | G | 127 | 57 | 46 | True |
| IISNP175 | chr2_27324182_27325292 | 501 | 611 | rs2384571 | chr2_27324182_27325292:543 | G | C | 111 | 43 | 30 | True |
| IISNP176 | chr5_75932415_75933522 | 501 | 608 | rs2455230 | chr5_75932415_75933522:551 | G | C | 108 | 51 | 27 | True |
| IISNP177 | chr5_140531170_140532269 | 501 | 600 | rs246703 | chr5_140531170_140532269:577 | C | G | 100 | 77 | 19 | True |
| IISNP178 | chr10_25700758_25701869 | 501 | 612 | rs2480345 | chr10_25700758_25701869:584 | C | G | 112 | 84 | 31 | False |
| IISNP179 | chr5_78339702_78340831 | 501 | 630 | rs248385 | chr5_78339702_78340831:556 | C | G | 130 | 56 | 49 | True |
| IISNP18 | chr9_27985366_27986466 | 501 | 601 | rs7041158 | chr9_27985366_27986466:573 | C | T | 101 | 73 | 20 | True |
| IISNP180 | chr1_62516111_62517226 | 501 | 616 | rs2498982 | chr1_62516111_62517226:573 | G | C | 116 | 73 | 35 | True |
| IISNP181 | chr10_38344113_38345242 | 501 | 630 | rs2505232 | chr10_38344113_38345242:588 | C | G | 130 | 88 | 49 | False |
| IISNP182 | chr11_94230690_94231811 | 501 | 622 | rs2509943 | chr11_94230690_94231811:568 | C | G | 122 | 68 | 41 | True |
| IISNP183 | chr16_4309882_4311001 | 501 | 620 | rs251732 | chr16_4309882_4311001:587 | C | G | 120 | 87 | 39 | False |
| IISNP184 | chr9_136536239_136537346 | 501 | 608 | rs2519123 | chr9_136536239_136537346:555 | C | G | 108 | 55 | 27 | True |
| IISNP185 | chr7_25194102_25195226 | 501 | 625 | rs2523072 | chr7_25194102_25195226:564 | G | C | 125 | 64 | 44 | True |
| IISNP186 | chr18_44560549_44561667 | 501 | 619 | rs2571028 | chr18_44560549_44561667:552 | C | G | 119 | 52 | 38 | True |
| IISNP187 | chr11_4566780_4567909 | 501 | 630 | rs2657167 | chr11_4566780_4567909:556 | C | G | 130 | 56 | 49 | True |
| IISNP188 | chr8_143694218_143695347 | 501 | 630 | rs28686812 | chr8_143694218_143695347:558 | G | C | 130 | 58 | 49 | True |
| IISNP189 | chr10_126714134_126715248 | 501 | 615 | rs2946994 | chr10_126714134_126715248:581 | G | C | 115 | 81 | 34 | True |
| IISNP19 | chr1_233447873_233448982 | 501 | 610 | rs1294331 | chr1_233447873_233448982:541 | C | T | 110 | 41 | 29 | True |
| IISNP190 | chr19_53343564_53344688 | 501 | 625 | rs10419826 | chr19_53343564_53344688:555 | C | G | 125 | 55 | 44 | True |
| IISNP191 | chr11_125763182_125764289 | 501 | 608 | rs3088241 | chr11_125763182_125764289:565 | C | G | 108 | 65 | 27 | True |
| IISNP192 | chr17_35901690_35902813 | 501 | 624 | rs3110623 | chr17_35901690_35902813:536 | C | G | 124 | 36 | 43 | False |
| IISNP193 | chr7_12268849_12269978 | 501 | 630 | rs3173615 | chr7_12268849_12269978:569 | C | G | 130 | 69 | 49 | True |
| IISNP194 | chr16_11773071_11774198 | 501 | 628 | rs3190321 | chr16_11773071_11774198:592 | C | G | 128 | 92 | 47 | False |
| IISNP195 | chr22_31490725_31491854 | 501 | 630 | rs3205187 | chr22_31490725_31491854:571 | G | C | 130 | 71 | 49 | True |
| IISNP196 | chr4_77660183_77661297 | 501 | 615 | rs344141 | chr4_77660183_77661297:549 | C | G | 115 | 49 | 34 | True |
| IISNP197 | chr4_186379303_186380429 | 501 | 627 | rs35596415 | chr4_186379303_186380429:597 | G | C | 127 | 97 | 46 | False |
| IISNP198 | chr22_22868645_22869769 | 501 | 625 | rs362124 | chr22_22868645_22869769:565 | C | G | 125 | 65 | 44 | True |
| IISNP199 | chr19_54663644_54664769 | 501 | 626 | rs36657 | chr19_54663644_54664769:566 | G | C | 126 | 66 | 45 | True |
| IISNP2 | chr3_113804421_113805528 | 501 | 608 | rs1872575 | chr3_113804421_113805528:559 | G | A | 108 | 59 | 27 | True |
| IISNP20 | chr5_17374335_17375441 | 501 | 607 | rs159606 | chr5_17374335_17375441:564 | A | G | 107 | 64 | 26 | True |
| IISNP200 | chr2_219601952_219603075 | 501 | 624 | rs3731877 | chr2_219601952_219603075:548 | G | C | 124 | 48 | 43 | True |
| IISNP201 | chr2_220378975_220380095 | 501 | 621 | rs3731909 | chr2_220378975_220380095:586 | C | G | 121 | 86 | 40 | False |
| IISNP202 | chr6_76659989_76661118 | 501 | 630 | rs3734311 | chr6_76659989_76661118:563 | G | C | 130 | 63 | 49 | True |
| IISNP203 | chr7_20180151_20181280 | 501 | 630 | rs3735615 | chr7_20180151_20181280:567 | C | G | 130 | 67 | 49 | True |
| IISNP204 | chr10_128018457_128019577 | 501 | 621 | rs3740199 | chr10_128018457_128019577:569 | C | G | 121 | 69 | 40 | True |
| IISNP205 | chr2_101009515_101010629 | 501 | 615 | rs3748930 | chr2_101009515_101010629:568 | G | C | 115 | 68 | 34 | True |
| IISNP206 | chr11_8946706_8947820 | 501 | 615 | rs3751066 | chr11_8946706_8947820:578 | G | C | 115 | 78 | 34 | True |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| IISNP245 | chr11_117163245_117164370 | 501 | 626 | rs638405 | chr11_117163245_117164370:580 | C | G | 126 | 80 | 45 | True |
| IISNP246 | chr6_56482232_56483352 | 501 | 621 | rs6459166 | chr6_56482232_56483352:570 | C | G | 121 | 70 | 40 | True |
| IISNP247 | chr6_138412785_138413907 | 501 | 623 | rs648802 | chr6_138412785_138413907:549 | G | C | 123 | 49 | 42 | True |
| IISNP248 | chr19_57837471_57838600 | 501 | 630 | rs6510057 | chr19_57837471_57838600:548 | C | G | 130 | 48 | 49 | False |
| IISNP249 | chr3_186917177_186918300 | 501 | 624 | rs6764714 | chr3_186917177_186918300:575 | C | G | 124 | 75 | 43 | True |
| IISNP25 | chr11_5098168_5099267 | 501 | 600 | rs10768550 | chr11_5098168_5099267:547 | C | T | 100 | 47 | 19 | True |
| IISNP250 | chr3_14755064_14756187 | 501 | 624 | rs6790129 | chr3_14755064_14756187:554 | C | G | 124 | 54 | 43 | True |
| IISNP251 | chr3_45052203_45053327 | 501 | 625 | rs6794 | chr3_45052203_45053327:573 | G | C | 125 | 73 | 44 | True |
| IISNP252 | chr3_183777454_183778574 | 501 | 621 | rs6807362 | chr3_183777454_183778574:557 | G | C | 121 | 57 | 40 | True |
| IISNP253 | chr4_139139958_139141085 | 501 | 628 | rs6838248 | chr4_139139958_139141085:537 | G | C | 128 | 37 | 47 | False |
| IISNP254 | chr7_141672808_141673933 | 501 | 626 | rs713598 | chr7_141672808_141673933:538 | C | G | 126 | 38 | 45 | False |
| IISNP255 | chr14_50798535_50799661 | 501 | 627 | rs7161563 | chr14_50798535_50799661:592 | G | C | 127 | 92 | 46 | False |
| IISNP256 | chr10_114052989_114054096 | 501 | 608 | rs726009 | chr10_114052989_114054096:558 | C | G | 108 | 58 | 27 | True |
| IISNP257 | chr1_214836531_214837646 | 501 | 616 | rs7289 | chr1_214836531_214837646:580 | C | G | 116 | 80 | 35 | True |
| IISNP258 | chr12_14018199_14019328 | 501 | 630 | rs7301328 | chr12_14018199_14019328:579 | G | C | 130 | 79 | 49 | True |
| IISNP259 | chr13_73348771_73349897 | 501 | 627 | rs7332388 | chr13_73348771_73349897:589 | G | C | 127 | 89 | 46 | False |
| IISNP26 | chr12_130761129_130762238 | 501 | 610 | rs10773760 | chr12_130761129_130762238:568 | A | G | 110 | 68 | 29 | True |
| IISNP260 | chr22_51063487_51064595 | 501 | 609 | rs743616 | chr22_51063487_51064595:553 | G | C | 109 | 53 | 28 | True |
| IISNP261 | chr6_36286765_36287879 | 501 | 615 | rs743852 | chr6_36286765_36287879:548 | G | C | 115 | 48 | 34 | True |
| IISNP262 | chr17_71232306_71233435 | 501 | 630 | rs745142 | chr17_71232306_71233435:576 | G | C | 130 | 76 | 49 | True |
| IISNP263 | chr6_46107197_46108304 | 501 | 608 | rs7451713 | chr6_46107197_46108304:556 | C | G | 108 | 56 | 27 | True |
| IISNP264 | chr1_205553518_205554618 | 501 | 601 | rs7526132 | chr1_205553518_205554618:568 | G | C | 101 | 68 | 20 | True |
| IISNP265 | chr1_47799106_47800221 | 501 | 616 | rs7543016 | chr1_47799106_47800221:534 | G | C | 116 | 34 | 35 | False |
| IISNP266 | chr2_28824241_28825363 | 501 | 623 | rs7601771 | chr2_28824241_28825363:553 | C | G | 123 | 53 | 42 | True |
| IISNP267 | chr7_4026399_4027521 | 501 | 623 | rs7785899 | chr7_4026399_4027521:546 | C | G | 123 | 46 | 42 | True |
| IISNP268 | chr1_111956532_111957661 | 501 | 630 | rs7825 | chr1_111956532_111957661:566 | C | G | 130 | 66 | 49 | True |
| IISNP269 | chr14_103439920_103441032 | 501 | 613 | rs8009219 | chr14_103439920_103441032:554 | G | C | 113 | 54 | 32 | True |
| IISNP27 | chr9_137416746_137417845 | 501 | 600 | rs10776839 | chr9_137416746_137417845:563 | G | T | 100 | 63 | 19 | True |
| IISNP270 | chr15_94883526_94884639 | 501 | 614 | rs8025851 | chr15_94883526_94884639:583 | G | C | 114 | 83 | 33 | False |
| IISNP271 | chr16_16278312_16279424 | 501 | 613 | rs8058696 | chr16_16278312_16279424:558 | G | C | 113 | 58 | 32 | True |
| IISNP272 | chr17_48625341_48626470 | 501 | 630 | rs8076632 | chr17_48625341_48626470:588 | C | G | 130 | 88 | 49 | False |
| IISNP273 | chr16_8952508_8953628 | 501 | 621 | rs8097 | chr16_8952508_8953628:574 | C | G | 121 | 74 | 40 | True |
| IISNP274 | chr19_18377056_18378185 | 501 | 630 | rs8103906 | chr19_18377056_18378185:592 | G | C | 130 | 92 | 49 | False |
| IISNP275 | chr1_17659939_17661046 | 501 | 608 | rs874881 | chr1_17659939_17661046:561 | G | C | 108 | 61 | 27 | True |
| IISNP276 | chr12_88440104_88441233 | 501 | 630 | rs9262 | chr12_88440104_88441233:573 | G | C | 130 | 73 | 49 | True |
| IISNP277 | chr3_118866464_118867580 | 501 | 617 | rs9289122 | chr3_118866464_118867580:584 | C | G | 117 | 84 | 36 | False |
| IISNP278 | chr17_42475406_42476535 | 501 | 630 | rs936019 | chr17_42475406_42476535:578 | G | C | 130 | 78 | 49 | True |
| IISNP279 | chr6_26508757_26509875 | 501 | 619 | rs9393728 | chr6_26508757_26509875:574 | C | G | 119 | 74 | 38 | True |
| IISNP28 | chr2_10085153_10086253 | 501 | 601 | rs1109037 | chr2_10085153_10086253:570 | G | A | 101 | 70 | 20 | True |
| IISNP280 | chr11_60700573_60701681 | 501 | 609 | rs9513 | chr11_60700573_60701681:564 | C | G | 109 | 64 | 28 | True |
| IISNP281 | chr19_56422500_56423625 | 501 | 626 | rs977070 | chr19_56422500_56423625:575 | C | G | 126 | 75 | 45 | True |
| IISNP282 | chr3_112642035_112643149 | 501 | 615 | rs9865242 | chr3_112642035_112643149:534 | C | G | 115 | 34 | 34 | False |
| IISNP29 | chr20_16240863_16241962 | 501 | 600 | rs12480506 | chr20_16240863_16241962:554 | A | G | 100 | 54 | 19 | True |
| IISNP3 | chr1_160786113_160787219 | 501 | 607 | rs560681 | chr1_160786113_160787219:558 | A | G | 107 | 58 | 26 | True |
| IISNP30 | chr2_182412681_182413789 | 501 | 609 | rs12997453 | chr2_182412681_182413789:579 | A | G | 109 | 79 | 28 | True |
| IISNP31 | chr4_76425332_76426441 | 501 | 610 | rs13134862 | chr4_76425332_76426441:565 | G | A | 110 | 65 | 29 | True |
| IISNP32 | chr6_12059397_12060504 | 501 | 608 | rs13218440 | chr6_12059397_12060504:558 | G | A | 108 | 58 | 27 | True |
| IISNP33 | chr6_94536699_94537824 | 501 | 626 | rs1336071 | chr6_94536699_94537824:557 | T | C | 126 | 57 | 45 | True |
| IISNP34 | chr6_123894407_123895512 | 501 | 606 | rs1358856 | chr6_123894407_123895512:572 | C | A | 106 | 72 | 25 | True |
| IISNP35 | chr10_97172060_97173166 | 501 | 607 | rs1410059 | chr10_97172060_97173166:536 | T | C | 107 | 36 | 26 | True |
| IISNP36 | chr6_120560128_120561231 | 501 | 604 | rs1478829 | chr6_120560128_120561231:567 | T | A | 104 | 67 | 23 | True |
| IISNP37 | chr1_4366758_4367875 | 501 | 618 | rs1490413 | chr1_4366758_4367875:566 | G | A | 118 | 66 | 37 | True |
| IISNP38 | chr11_5708471_5709577 | 501 | 607 | rs1498553 | chr11_5708471_5709577:558 | C | T | 107 | 58 | 26 | True |
| IISNP39 | chr20_51295583_51296712 | 501 | 630 | rs1523537 | chr20_51295583_51296712:580 | T | C | 130 | 80 | 49 | True |
| IISNP4 | chr8_144656177_144657285 | 501 | 609 | rs4606077 | chr8_144656177_144657285:578 | T | C | 109 | 78 | 28 | True |
| IISNP40 | chr4_157489335_157490443 | 501 | 609 | rs1554472 | chr4_157489335_157490443:572 | G | A | 109 | 72 | 28 | True |
| IISNP41 | chr18_55225209_55226308 | 501 | 600 | rs1736442 | chr18_55225209_55226308:569 | T | C | 100 | 69 | 19 | True |
| IISNP42 | chr15_39312848_39313954 | 501 | 607 | rs1821380 | chr15_39312848_39313954:555 | C | G | 107 | 55 | 26 | True |
| IISNP43 | chr4_10968504_10969612 | 501 | 609 | rs2046361 | chr4_10968504_10969612:556 | T | A | 109 | 56 | 28 | True |
| IISNP44 | chr22_23801605_23802709 | 501 | 605 | rs2073383 | chr22_23801605_23802709:567 | T | C | 105 | 67 | 24 | True |
| IISNP45 | chr6_152697130_152698240 | 501 | 611 | rs214955 | chr6_152697130_152698240:577 | C | T | 111 | 77 | 30 | True |
| IISNP46 | chr17_41286243_41287360 | 501 | 618 | rs2175957 | chr17_41286243_41287360:580 | T | G | 118 | 80 | 37 | True |
| IISNP47 | chr12_6908891_6910000 | 501 | 610 | rs2255301 | chr12_6908891_6910000:552 | T | C | 110 | 52 | 29 | True |
| IISNP48 | chr12_6945352_6946456 | 501 | 605 | rs2269355 | chr12_6945352_6946456:563 | C | G | 105 | 63 | 24 | True |
| IISNP49 | chr9_14746585_14747714 | 501 | 630 | rs2270529 | chr9_14746585_14747714:549 | T | C | 130 | 49 | 49 | False |
| IISNP5 | chr12_40862467_40863585 | 501 | 619 | rs2920816 | chr12_40862467_40863585:586 | A | G | 119 | 86 | 38 | False |
| IISNP50 | chr6_148760890_148761999 | 501 | 610 | rs2272998 | chr6_148760890_148761999:567 | G | C | 110 | 67 | 29 | True |
| IISNP51 | chr17_80525564_80526669 | 501 | 606 | rs2291395 | chr17_80525564_80526669:576 | A | G | 106 | 76 | 25 | True |
| IISNP52 | chr17_80765219_80766321 | 501 | 603 | rs2292972 | chr17_80765219_80766321:570 | T | C | 103 | 70 | 22 | True |
| IISNP53 | chr3_110300565_110301664 | 501 | 600 | rs2399332 | chr3_110300565_110301664:562 | T | G | 100 | 62 | 19 | True |
| IISNP54 | chr6_127462805_127463913 | 501 | 609 | rs2503107 | chr6_127462805_127463913:572 | C | A | 109 | 72 | 28 | True |
| IISNP55 | chr20_23016527_23017635 | 501 | 609 | rs2567608 | chr20_23016527_23017635:556 | T | C | 109 | 56 | 28 | True |
| IISNP56 | chr6_55155134_55156239 | 501 | 606 | rs2811231 | chr6_55155134_55156239:571 | C | A | 106 | 71 | 25 | True |
| IISNP57 | chr21_33582165_33583274 | 501 | 610 | rs2833736 | chr21_33582165_33583274:558 | G | A | 110 | 58 | 29 | True |
| IISNP58 | chr5_169735367_169736476 | 501 | 610 | rs315791 | chr5_169735367_169736476:554 | A | C | 110 | 54 | 29 | True |
| IISNP59 | chr7_137029274_137030380 | 501 | 607 | rs321198 | chr7_137029274_137030380:565 | T | C | 107 | 65 | 26 | True |
| IISNP6 | chr7_4309792_4310920 | 501 | 629 | rs6955448 | chr7_4309792_4310920:574 | C | T | 129 | 74 | 48 | True |
| IISNP60 | chr5_178690152_178691259 | 501 | 608 | rs338882 | chr5_178690152_178691259:574 | G | A | 108 | 74 | 27 | True |
| IISNP61 | chr17_80739299_80740406 | 501 | 608 | rs3744163 | chr17_80739299_80740406:561 | G | C | 108 | 61 | 27 | True |
| IISNP62 | chr10_17192789_17193898 | 501 | 610 | rs3780962 | chr10_17192789_17193898:558 | A | G | 110 | 58 | 29 | True |
| IISNP63 | chr8_136838646_136839775 | 501 | 630 | rs4288409 | chr8_136838646_136839775:584 | A | C | 130 | 84 | 49 | False |
| IISNP64 | chr14_104768569_104769678 | 501 | 610 | rs4530059 | chr14_104768569_104769678:581 | G | A | 110 | 81 | 29 | True |
| IISNP65 | chr21_28022802_28023902 | 501 | 601 | rs464663 | chr21_28022802_28023902:569 | T | C | 101 | 69 | 20 | True |
| IISNP66 | chr17_80531082_80532207 | 501 | 626 | rs4789798 | chr17_80531082_80532207:562 | C | G | 126 | 62 | 45 | True |
| IISNP67 | chr17_6810940_6812066 | 501 | 627 | rs4796362 | chr17_6810940_6812066:590 | G | A | 127 | 90 | 46 | False |
| IISNP68 | chr1_105717077_105718184 | 501 | 608 | rs4847034 | chr1_105717077_105718184:555 | A | G | 108 | 55 | 27 | True |
| IISNP69 | chr18_47370442_47371541 | 501 | 600 | rs521861 | chr18_47370442_47371541:573 | C | G | 100 | 73 | 19 | True |
| IISNP7 | chr13_100037637_100038761 | 501 | 625 | rs1058083 | chr13_100037637_100038761:597 | A | G | 125 | 97 | 44 | False |
| IISNP70 | chr22_19920061_19921192 | 501 | 632 | rs5746846 | chr22_19920061_19921192:586 | C | G | 132 | 86 | 51 | False |
| IISNP71 | chr11_122195414_122196543 | 501 | 630 | rs590162 | chr11_122195414_122196543:576 | C | T | 130 | 76 | 49 | True |
| IISNP72 | chr3_193206814_193207921 | 501 | 608 | rs6444724 | chr3_193206814_193207921:567 | T | C | 108 | 67 | 27 | True |
| IISNP73 | chr11_105912429_105913529 | 501 | 601 | rs6591147 | chr11_105912429_105913529:556 | T | C | 101 | 56 | 20 | True |
| IISNP74 | chr17_80715140_80716246 | 501 | 607 | rs689512 | chr17_80715140_80716246:563 | G | C | 107 | 63 | 26 | True |
| IISNP75 | chr16_7519685_7520809 | 501 | 625 | rs7205345 | chr16_7519685_7520809:570 | C | G | 125 | 70 | 44 | True |
| IISNP76 | chr14_53216148_53217276 | 501 | 629 | rs722290 | chr14_53216148_53217276:576 | G | C | 129 | 76 | 48 | True |
| IISNP77 | chr18_22738427_22739556 | 501 | 630 | rs7229946 | chr18_22738427_22739556:575 | G | A | 130 | 75 | 49 | True |
| IISNP78 | chr10_118506324_118507433 | 501 | 610 | rs740598 | chr10_118506324_118507433:576 | G | A | 110 | 76 | 29 | True |
| IISNP79 | chr1_14154833_14155962 | 501 | 630 | rs7520386 | chr1_14154833_14155962:570 | G | A | 130 | 70 | 49 | True |
| IISNP8 | chr21_43606463_43607573 | 501 | 611 | rs221956 | chr21_43606463_43607573:535 | T | C | 111 | 35 | 30 | True |
| IISNP80 | chr5_159487382_159488507 | 501 | 626 | rs7704770 | chr5_159487382_159488507:572 | G | A | 126 | 72 | 45 | True |
| IISNP81 | chr17_41341424_41342523 | 501 | 600 | rs8070085 | chr17_41341424_41342523:561 | A | G | 100 | 61 | 19 | True |
| IISNP82 | chr17_80461344_80462465 | 501 | 622 | rs8078417 | chr17_80461344_80462465:592 | C | T | 122 | 92 | 41 | False |
| IISNP83 | chr1_239881353_239882471 | 501 | 619 | rs891700 | chr1_239881353_239882471:574 | A | G | 119 | 74 | 38 | True |
| IISNP84 | chr11_11095660_11096769 | 501 | 610 | rs901398 | chr11_11095660_11096769:562 | C | T | 110 | 62 | 29 | True |
| IISNP85 | chr13_84456181_84457286 | 501 | 606 | rs9546538 | chr13_84456181_84457286:555 | T | C | 106 | 55 | 25 | True |
| IISNP86 | chr22_19919790_19920889 | 501 | 600 | rs9606186 | chr22_19919790_19920889:570 | C | G | 100 | 70 | 19 | True |
| IISNP87 | chr18_29310484_29311587 | 501 | 604 | rs985492 | chr18_29310484_29311587:551 | G | A | 104 | 51 | 23 | True |
| IISNP88 | chr3_59487752_59488863 | 501 | 612 | rs9866013 | chr3_59487752_59488863:589 | T | C | 112 | 89 | 31 | False |
| IISNP89 | chr22_33558944_33560052 | 501 | 609 | rs987640 | chr22_33558944_33560052:565 | T | A | 109 | 65 | 28 | True |
| IISNP9 | chr5_136632784_136633892 | 501 | 609 | rs13182883 | chr5_136632784_136633892:555 | G | A | 109 | 55 | 28 | True |
| IISNP90 | chr17_2918812_2919921 | 501 | 610 | rs9905977 | chr17_2918812_2919921:582 | A | G | 110 | 82 | 29 | True |
| IISNP91 | chr2_124108634_124109748 | 501 | 615 | rs993934 | chr2_124108634_124109748:580 | A | G | 115 | 80 | 34 | True |
| IISNP92 | chr18_9749309_9750416 | 501 | 608 | rs9951171 | chr18_9749309_9750416:571 | G | A | 108 | 71 | 27 | True |
| IISNP93 | chr7_47924777_47925902 | 501 | 626 | rs10274334 | chr7_47924777_47925902:555 | C | G | 126 | 55 | 45 | True |
| IISNP94 | chr19_57085220_57086327 | 501 | 608 | rs10421285 | chr19_57085220_57086327:550 | G | C | 108 | 50 | 27 | True |
| IISNP95 | chr19_41938759_41939869 | 501 | 611 | rs1043413 | chr19_41938759_41939869:539 | C | G | 111 | 39 | 30 | True |
| IISNP96 | chr1_19447280_19448406 | 501 | 627 | rs1044010 | chr1_19447280_19448406:564 | C | G | 127 | 64 | 46 | True |
| IISNP97 | chr8_142203762_142204884 | 501 | 623 | rs1045248 | chr8_142203762_142204884:565 | C | G | 123 | 65 | 42 | True |
| IISNP98 | chr14_31354504_31355624 | 501 | 621 | rs1045644 | chr14_31354504_31355624:593 | C | G | 121 | 93 | 40 | False |
| IISNP99 | chr11_58318053_58319181 | 501 | 629 | rs1047979 | chr11_58318053_58319181:567 | C | G | 129 | 67 | 48 | True |
282 rows × 11 columns
namedtuple()
--------------------------------------------------------------------------- NameError Traceback (most recent call last) <ipython-input-61-726b1c1dd7f6> in <module>() ----> 1 namedtuple() NameError: name 'namedtuple' is not defined
snp_annots = defaultdict(namedtuple)
df_bySNP.groupby('SNP_NAME').ALL_READS.mean().sort_values()[:20].iplot(kind='barh',)# annotations=snp_annots)#, figsize=(10,16))#, rot=30)
df_all_AV_blanks.PCT_DD_CFDNA.plot(kind='hist', ec='k', lw=1.5, fc='w', bins=20, label=str(df_all_AV_blanks.PCT_DD_CFDNA.describe()), legend='right')
plt.gca().legend(loc='best',
bbox_to_anchor=(1, 1))
sns.despine(offset=10, trim=True)
sns.set_style('ticks')
df_all_AV_blanks.QC_RESULT.describe()
# .PCT_DD_CFDNA.plot(kind='hist', ec='k', lw=1.5, fc='w', bins=20, label=str(df_all_AV_blanks.PCT_DD_CFDNA.describe()), legend='right')
# plt.gca().legend(loc='best',
# bbox_to_anchor=(1, 1))
# sns.despine(offset=10, trim=True)
# sns.set_style('ticks')
count 180 unique 1 top PASS freq 180 Name: QC_RESULT, dtype: object
return_numeric(df_all).hist(fc='k', ec='r', lw=1.0, bins=30, alpha=0.5, figsize=(24,8), layout=(2,5), xrot=30)# sharey=True, )
sns.despine(offset=10)
sns.set_style('ticks')
return_numeric(df_all).corr()
| CLUSTER_DENSITY | ID | PCT_DD_CFDNA | READS_PASS_QC | SNPS_PASS_QC | TOTAL_READS | |
|---|---|---|---|---|---|---|
| CLUSTER_DENSITY | 1.000000 | -0.438208 | 0.035895 | 0.111602 | -0.018882 | 0.112193 |
| ID | -0.438208 | 1.000000 | -0.169445 | -0.052886 | 0.023769 | -0.053741 |
| PCT_DD_CFDNA | 0.035895 | -0.169445 | 1.000000 | -0.059137 | -0.448501 | -0.058069 |
| READS_PASS_QC | 0.111602 | -0.052886 | -0.059137 | 1.000000 | 0.618406 | 0.999925 |
| SNPS_PASS_QC | -0.018882 | 0.023769 | -0.448501 | 0.618406 | 1.000000 | 0.614255 |
| TOTAL_READS | 0.112193 | -0.053741 | -0.058069 | 0.999925 | 0.614255 | 1.000000 |
df_all.PCT_DD_CFDNA.clip_upper(0.01).mean()
0.00020777777777777792
# Gather via input list DART_patient_IDs linked by unique Sample_Name
# --> insert into existing df_all_DART to replace nan's in current PATIENT_ID col
# df_DART_PIDs = pd.read_csv(DART_lock2_PIDs)
# df_DART_PIDs
# ## DART STUDY
# DART_PIDs = {}
# DART_PID_to_EID = defaultdict(list)
# # for i,(eid,pid) in enumerate(zip(df_all_DART.index, df_all_DART.PATIENT_STUDY_ID)):
# for pid,eid in zip(df_DART_PIDs.SITE_SUBJECT_ID, df_DART_PIDs.SAMPLE_NAME):
# DART_PIDs[eid] = pid
# DART_PID_to_EID[pid].append(eid)
# # DART_PIDs.items()
# df_DART_bySNP.describe(include='all')
# df_QC_Eval_bySNP.describe(include='all')
# print(sorted(df_DART_bySNP.SNP_NAME.unique()))
# len(sorted(df_DART_bySNP.SNP_NAME.unique()))
# help(pd.DataFrame.set_index)
# help(pd.DataFrame.plot)
df_bySNP.loc[df_bySNP.SNP_NAME=='IISNP145',:]
| ID | RUN_ID | EXPERIMENT_NAME | AMPLICON_NAME | SNP_NAME | CHROMOSOME | POSITION | REF | ALT | REF_COUNT | ALT_COUNT | REF_FREQ | ALT_FREQ | REF_ALT_READS | ALL_READS | ERR_COUNT | ERR_FREQ_TOTAL | CHROMOSOME_MOCK | POSITION_MOCK | DONORFREQUENCY | ALT_FREQ_TOTAL | REF_FREQ_TOTAL | DONORFREQUENCYTOTAL | RECIPIENTALLELE | DONORALLELE | SUBSTITUTION | SNPDIRECTION | SAMPLE_PROJECT | UNIQUEID | RELATIVE_COVERAGE | REFALTFRACTION | SNPPASSQC | BACKGROUND | ADJUSTEDFREQUENCY | RECIPIENTGENOCALL | ERR_FREQ_FIXED | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SAMPLE_NAME | ||||||||||||||||||||||||||||||||||||
| Streck0008-Oct-22-15 | 2141.0 | 248.0 | PS20151022P1 | aIISNP145 | IISNP145 | chr12 | 5021348.0 | G | C | 3900.0 | 3833.0 | 0.504332 | 0.495668 | 7733.0 | 8128.0 | 395.0 | 0.048597 | chr12_5020815_5021938 | 534.0 | 0.495668 | 0.47158 | 0.479823 | 0.47158 | G | C | GC | IISNP145 GC | NaN | Streck0008-Oct-22-15 | 1.550679 | 0.951403 | True | 0.000174 | 0.495494 | Recipient Hetero | 0.544091 |
# !pip install cufflinks
df_bySNP.UNIQUEID.describe()
count 46847 unique 180 top HRZ-6-9-60-Oct-7-15 freq 262 Name: UNIQUEID, dtype: object
# ax = df_bySNP.ERR_FREQ_TOTAL.groupby(df_bySNP.SNP_NAME).mean().nlargest(20)#.plot('barh', figsize=(10,25), )#, grid=True, fc='w', alpha=0.75, ec='b', lw=5)
sns.set_style('ticks')
df_bySNP['ERR_FREQ_FIXED'] = df_bySNP['ERR_FREQ_TOTAL'] + df_bySNP['DONORFREQUENCY']
df_bySNP.ERR_FREQ_FIXED.describe()
/Users/jcollins-macbook/anaconda3/lib/python3.6/site-packages/ipykernel_launcher.py:3: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame. Try using .loc[row_indexer,col_indexer] = value instead See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
count 493905.000000 mean 0.211878 std 0.223675 min 0.000000 25% 0.001368 50% 0.048187 75% 0.465293 max 1.493711 Name: ERR_FREQ_FIXED, dtype: float64
SNP_cov['SNP_NAME'] = SNP_cov.index
# df_bySNP_numeric.sort_index(inplace=True, axis=1)
AV_SNP_stats = df_bySNP.groupby(df_bySNP['SNP_NAME']).describe().unstack()
missing_snps = SNP_cov[~SNP_cov.index.isin(AV_SNP_stats.index)]
for ghost_snp in missing_snps.index:
AV_SNP_stats.loc[ghost_snp,:] = np.nan
AV_SNP_stats.index
Index(['IISNP1', 'IISNP10', 'IISNP100', 'IISNP101', 'IISNP102', 'IISNP103', 'IISNP104', 'IISNP105',
'IISNP106', 'IISNP107',
...
'IISNP220', 'IISNP223', 'IISNP240', 'IISNP280', 'IISNP33', 'IISNP37', 'IISNP44', 'IISNP5',
'IISNP61', 'IISNP77'],
dtype='object', name='SNP_NAME', length=282)
AV_SNP_stats.to_csv('AV_N=1927_stats_170412.csv')
missing_snps
| Genome_location | Ref_start_pos | Ref_end_pos | rsID | SNP_pos_in_ref | Ref | Alt | amp_length | SNP_pos | SNP_cov_end_bound | SNP_cov_type | SNP_NAME | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP_ID | ||||||||||||
| IISNP118 | chr12_121416065_121417194 | 501 | 630 | rs1169289 | chr12_121416065_121417194:558 | C | G | 130 | 58 | 49 | True | IISNP118 |
| IISNP141 | chr6_33272320_33273427 | 501 | 608 | rs2071888 | chr6_33272320_33273427:536 | G | C | 108 | 36 | 27 | True | IISNP141 |
| IISNP153 | chr14_58563143_58564270 | 501 | 628 | rs2273442 | chr14_58563143_58564270:552 | G | C | 128 | 52 | 47 | True | IISNP153 |
| IISNP155 | chr12_130940594_130941723 | 501 | 630 | rs2277361 | chr12_130940594_130941723:557 | G | C | 130 | 57 | 49 | True | IISNP155 |
| IISNP18 | chr9_27985366_27986466 | 501 | 601 | rs7041158 | chr9_27985366_27986466:573 | C | T | 101 | 73 | 20 | True | IISNP18 |
| IISNP183 | chr16_4309882_4311001 | 501 | 620 | rs251732 | chr16_4309882_4311001:587 | C | G | 120 | 87 | 39 | False | IISNP183 |
| IISNP201 | chr2_220378975_220380095 | 501 | 621 | rs3731909 | chr2_220378975_220380095:586 | C | G | 121 | 86 | 40 | False | IISNP201 |
| IISNP220 | chr5_113697957_113699073 | 501 | 617 | rs40179 | chr5_113697957_113699073:588 | G | C | 117 | 88 | 36 | False | IISNP220 |
| IISNP223 | chr2_26698552_26699653 | 501 | 602 | rs4335905 | chr2_26698552_26699653:575 | C | G | 102 | 75 | 21 | True | IISNP223 |
| IISNP240 | chr11_85436305_85437424 | 501 | 620 | rs597480 | chr11_85436305_85437424:564 | G | C | 120 | 64 | 39 | True | IISNP240 |
| IISNP280 | chr11_60700573_60701681 | 501 | 609 | rs9513 | chr11_60700573_60701681:564 | C | G | 109 | 64 | 28 | True | IISNP280 |
| IISNP33 | chr6_94536699_94537824 | 501 | 626 | rs1336071 | chr6_94536699_94537824:557 | T | C | 126 | 57 | 45 | True | IISNP33 |
| IISNP37 | chr1_4366758_4367875 | 501 | 618 | rs1490413 | chr1_4366758_4367875:566 | G | A | 118 | 66 | 37 | True | IISNP37 |
| IISNP44 | chr22_23801605_23802709 | 501 | 605 | rs2073383 | chr22_23801605_23802709:567 | T | C | 105 | 67 | 24 | True | IISNP44 |
| IISNP5 | chr12_40862467_40863585 | 501 | 619 | rs2920816 | chr12_40862467_40863585:586 | A | G | 119 | 86 | 38 | False | IISNP5 |
| IISNP61 | chr17_80739299_80740406 | 501 | 608 | rs3744163 | chr17_80739299_80740406:561 | G | C | 108 | 61 | 27 | True | IISNP61 |
| IISNP77 | chr18_22738427_22739556 | 501 | 630 | rs7229946 | chr18_22738427_22739556:575 | G | A | 130 | 75 | 49 | True | IISNP77 |
high = df_bySNP.ERR_FREQ_FIXED.groupby(df_bySNP.SNP_NAME).mean().nlargest(50)#.plot('barh', figsize=(10,25), )
high_snps = df_bySNP[df_bySNP.SNP_NAME.isin(high.index)]
high_snps_stats = high_snps.ERR_FREQ_FIXED.groupby(high_snps.SNP_NAME).describe().unstack()#.plot('barh', figsize=(8,30))
# high_snps_stats.drop('count', axis=1).sort_values(by='mean').iplot(by='index', kind='bar', figsize=(25,10), grid=True, logy=True,)
high_snps_stats.loc[:,['max', 'min', 'mean', '25%', '50%', '75%', 'std']].sort_values(by='50%').iplot(
kind='bar', title="AV Blanks - Error frequency stats", theme='ggplot', logy=False, orientation='horizontal', sortbars=True,
)#, figsize=(25,10), grid=True, logy=True,)
/Users/jcollins-macbook/anaconda3/lib/python3.6/site-packages/cufflinks/plotlytools.py:123: FutureWarning: sort is deprecated, use sort_values(inplace=True) for INPLACE sorting
df_snp_stats = df_bySNP.groupby('SNP_NAME').describe().unstack()
# df_all.sort_values(by='RUN_DATE',inplace=True)
# df_all.reset_index(inplace=True)
# df_all.loc[:,['RUN_DATE','RUN_NAME','SAMPLENAME']]
# df_bySNP_numeric = df_bySNP.select_dtypes(['float64'])#.columns
# df_bySNP_numeric = df_bySNP_numeric.loc[:,['REF_COUNT', 'ALT_COUNT', 'REF_FREQ', 'ALT_FREQ', 'REF_ALT_READS', 'ALL_READS', 'ERR_COUNT', 'ERR_FREQ_TOTAL', 'DONORFREQUENCY', 'ALT_FREQ_TOTAL', 'REF_FREQ_TOTAL', 'DONORFREQUENCYTOTAL', 'RELATIVE_COVERAGE', 'REFALTFRACTION', 'BACKGROUND', 'ADJUSTEDFREQUENCY', 'ERR_FREQ_FIXED']]
# # df_bySNP_numeric
# AV_SNP_stats.to_csv('AV_SNP_error_background(+more)_general_stats.csv')
AV_SNP_stats.to_csv('AV_SNP_error_background(+more)_general_stats.csv')
AV_SNP_stats.columns
MultiIndex(levels=[['ADJUSTEDFREQUENCY', 'ALL_READS', 'ALT_COUNT', 'ALT_FREQ', 'ALT_FREQ_TOTAL', 'BACKGROUND', 'DONORFREQUENCY', 'DONORFREQUENCYTOTAL', 'ERR_COUNT', 'ERR_FREQ_FIXED', 'ERR_FREQ_TOTAL', 'REFALTFRACTION', 'REF_ALT_READS', 'REF_COUNT', 'REF_FREQ', 'REF_FREQ_TOTAL', 'RELATIVE_COVERAGE'], ['count', 'mean', 'std', 'min', '25%', '50%', '75%', 'max']],
labels=[[0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 4, 4, 4, 4, 4, 4, 4, 4, 5, 5, 5, 5, 5, 5, 5, 5, 6, 6, 6, 6, 6, 6, 6, 6, 7, 7, 7, 7, 7, 7, 7, 7, 8, 8, 8, 8, 8, 8, 8, 8, 9, 9, 9, 9, 9, 9, 9, 9, 10, 10, 10, 10, 10, 10, 10, 10, 11, 11, 11, 11, 11, 11, 11, 11, 12, 12, 12, 12, 12, 12, 12, 12, 13, 13, 13, 13, 13, 13, 13, 13, 14, 14, 14, 14, 14, 14, 14, 14, 15, 15, 15, 15, 15, 15, 15, 15, 16, 16, 16, 16, 16, 16, 16, 16], [0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7, 0, 1, 2, 3, 4, 5, 6, 7]])
help(pd.DataFrame.nlargest)
Help on function nlargest in module pandas.core.frame:
nlargest(self, n, columns, keep='first')
Get the rows of a DataFrame sorted by the `n` largest
values of `columns`.
.. versionadded:: 0.17.0
Parameters
----------
n : int
Number of items to retrieve
columns : list or str
Column name or names to order by
keep : {'first', 'last', False}, default 'first'
Where there are duplicate values:
- ``first`` : take the first occurrence.
- ``last`` : take the last occurrence.
Returns
-------
DataFrame
Examples
--------
>>> df = DataFrame({'a': [1, 10, 8, 11, -1],
... 'b': list('abdce'),
... 'c': [1.0, 2.0, np.nan, 3.0, 4.0]})
>>> df.nlargest(3, 'a')
a b c
3 11 c 3
1 10 b 2
2 8 d NaN
AV_SNP_stats.BACKGROUND.nlargest(20, columns=['mean']).drop(['count'],axis=1).iplot(kind='bar', title="AV Blanks - Background stats",
theme='ggplot', logy=False, orientation='horizontal', sortbars=True,)
/Users/jcollins-macbook/anaconda3/lib/python3.6/site-packages/cufflinks/plotlytools.py:123: FutureWarning: sort is deprecated, use sort_values(inplace=True) for INPLACE sorting
AV_SNP_stats.BACKGROUND.describe()
| count | mean | std | min | 25% | 50% | 75% | max | |
|---|---|---|---|---|---|---|---|---|
| count | 265.000000 | 258.000000 | 256.000000 | 258.000000 | 258.000000 | 258.000000 | 258.000000 | 258.000000 |
| mean | 143.649057 | 0.000421 | 0.000075 | 0.000294 | 0.000362 | 0.000412 | 0.000473 | 0.000606 |
| std | 41.298725 | 0.000464 | 0.000105 | 0.000296 | 0.000385 | 0.000454 | 0.000540 | 0.000715 |
| min | 0.000000 | 0.000167 | 0.000016 | 0.000121 | 0.000153 | 0.000162 | 0.000167 | 0.000167 |
| 25% | 157.000000 | 0.000179 | 0.000018 | 0.000143 | 0.000165 | 0.000179 | 0.000191 | 0.000220 |
| 50% | 160.000000 | 0.000180 | 0.000019 | 0.000144 | 0.000166 | 0.000180 | 0.000193 | 0.000235 |
| 75% | 160.000000 | 0.000271 | 0.000036 | 0.000148 | 0.000174 | 0.000202 | 0.000330 | 0.000435 |
| max | 160.000000 | 0.001575 | 0.000337 | 0.001055 | 0.001496 | 0.001606 | 0.001750 | 0.002116 |
AV_SNP_stats.ADJUSTEDFREQUENCY.nlargest(20, columns=['mean']).drop(['count'],axis=1).iplot(kind='bar', title="AV Blanks - AdjFreq stats",
theme='ggplot', logy=False, orientation='horizontal', sortbars=True,)
/Users/jcollins-macbook/anaconda3/lib/python3.6/site-packages/cufflinks/plotlytools.py:123: FutureWarning: sort is deprecated, use sort_values(inplace=True) for INPLACE sorting
AV_SNP_stats.ADJUSTEDFREQUENCY.nsmallest(20, columns=['mean']).drop(['count'],axis=1).iplot(kind='bar', title="AV Blanks - AdjFreq stats",
theme='ggplot', logy=False, orientation='horizontal', sortbars=True,)
/Users/jcollins-macbook/anaconda3/lib/python3.6/site-packages/cufflinks/plotlytools.py:123: FutureWarning: sort is deprecated, use sort_values(inplace=True) for INPLACE sorting
AV_SNP_stats.ADJUSTEDFREQUENCY.describe()
| count | mean | std | min | 25% | 50% | 75% | max | |
|---|---|---|---|---|---|---|---|---|
| count | 265.000000 | 258.000000 | 256.000000 | 258.000000 | 258.000000 | 258.000000 | 258.000000 | 258.000000 |
| mean | 143.649057 | 0.205619 | 0.209457 | 0.001465 | 0.020342 | 0.159086 | 0.408443 | 0.480898 |
| std | 41.298725 | 0.079875 | 0.039569 | 0.030894 | 0.081386 | 0.201397 | 0.136541 | 0.077068 |
| min | 0.000000 | -0.000167 | 0.000301 | -0.002116 | -0.001414 | -0.001006 | -0.000167 | -0.000167 |
| 25% | 157.000000 | 0.151772 | 0.202986 | -0.000349 | -0.000167 | 0.000317 | 0.426659 | 0.497523 |
| 50% | 160.000000 | 0.206468 | 0.220219 | -0.000219 | 0.000023 | 0.001235 | 0.464285 | 0.498968 |
| 75% | 160.000000 | 0.251562 | 0.231617 | -0.000210 | 0.000325 | 0.409708 | 0.480335 | 0.499542 |
| max | 160.000000 | 0.495494 | 0.242007 | 0.495494 | 0.495494 | 0.495494 | 0.495494 | 0.499840 |
!jupyter nbconvert --to slides AlloSure_SNP_error_analysis_160412.ipynb